View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_14 (Length: 444)
Name: NF8581_low_14
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 13216659 - 13216234
Alignment:
| Q |
1 |
atcgccaattagttatagatgcgctgttcagtttttagtctgttggaatttaccagtggtttattttttggtgcacagctagactagtgcagaattcagt |
100 |
Q |
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| T |
13216659 |
atcgccaattagttatggatgcgctgttcagtttttagtctgttggaatttaccagtggtttattttttggtgcacagctagactagtgcagaattcagt |
13216560 |
T |
|
| Q |
101 |
atattctaaatggttattgctcgtctttgtgataggtatcaagaccctacataaaagatgatctatttatcaaggaagctgaggccagatataaaggctt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13216559 |
atattctaaatggttattgatcgtctttgtgataggtatcaagaccctatataaaagatgatctatttatcaaggaagctgaggccagatataaaggctt |
13216460 |
T |
|
| Q |
201 |
tctgtatcttatcaagaaaaacaaggagaagggtataaaccgcttttgtgttccaacatacgatatcgatctaatgtggcactctcaccagttacatcca |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13216459 |
tctgtatcttattaagaaaaacaaggagaagggtataaaccgcttttgtgttccaacatatgatatcgatctaatgtggcactctcaccagttacatcca |
13216360 |
T |
|
| Q |
301 |
gttgcttatagtaaagacctcaatgaggcacttggaaaaatattggaacacgatgacactgactcagacagaaccaaaggaaagaaactggatgttgggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13216359 |
gttgcttatagtaaagacctcaatgaggcacttggaaaaatattggaacacgatgatactgactcagacagaaccaaaggaaagaaactggatgttgggt |
13216260 |
T |
|
| Q |
401 |
tttctggaaccaccaaacagtgggaa |
426 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
13216259 |
tttctggaaccaccaaacagtgggaa |
13216234 |
T |
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