View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_15 (Length: 433)
Name: NF8581_low_15
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_15 |
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| [»] scaffold0025 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 50494676 - 50494417
Alignment:
| Q |
20 |
caagttgcattattccattccaaacctagacaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattacgagttacttcaacttca |
119 |
Q |
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| T |
50494676 |
caagttgcattattccattccaaacctagacaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattacgagttacttcaacttca |
50494577 |
T |
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| Q |
120 |
agaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatatca |
219 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50494576 |
agaaagtatctcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaacaattcttcacaatttgctttatatatca |
50494477 |
T |
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| Q |
220 |
aatcgtccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagt |
280 |
Q |
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| T |
50494476 |
aatcgtccacacacagaccgacaattgaaatcttt-cttcaacgtgtttcacaaatatagt |
50494417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 274 - 360
Target Start/End: Complemental strand, 50493676 - 50493590
Alignment:
| Q |
274 |
atatagtatgctcatgatgacatttttcaaagttttcttgacagaaataaacttaaatcttactataccatgctcttgatgtttgtt |
360 |
Q |
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| T |
50493676 |
atatagtatgctcatgatgacatttttcaaagttctcttgacagaaataaacttaaatcttactataccatgctcttggtgtttgtt |
50493590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 42971319 - 42971054
Alignment:
| Q |
24 |
ttgcattattccattccaaacctagacaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattacgagttacttcaacttcaagaa |
123 |
Q |
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| T |
42971319 |
ttgcattcttccataccaaatatggacaagatttctcttgcatatttctgctgatgaataaaaattccattggcatcttgagttacttctaatccaagaa |
42971220 |
T |
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| Q |
124 |
agtatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatatcaaatc |
223 |
Q |
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||| |||| ||||| ||||| ||||| |||| | |||||||| ||| |||| |||||||||| |||||| ||| | || ||||||||| ||| |
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| T |
42971219 |
ggtacctcatcttccccaaatcagtcatgtcaaaatgtttcttcatagagtctataaaaccttcaaataactcttcataatatcctgtatatatcagatc |
42971120 |
T |
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| Q |
224 |
gtccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagtatgctcatg |
289 |
Q |
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| T |
42971119 |
atctacatacagactcacaatcaaacactttccttcagcatgtttcacaaacaaagtatgctcatg |
42971054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 121 - 391
Target Start/End: Original strand, 10781721 - 10781991
Alignment:
| Q |
121 |
gaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatatcaa |
220 |
Q |
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||||||| |||| ||||| || |||| ||||||||| ||||||||||||||||| | ||||||||||| || |||||||||||| | | | ||||| |
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| T |
10781721 |
gaaagtacctcatcttccccaagtctgacatagcaaaattcttcttcatggagcatttgaaatcttcaaagaactcttcacaatttccagtgaagatcaa |
10781820 |
T |
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| Q |
221 |
atcgtccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacagaaa |
320 |
Q |
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| T |
10781821 |
gtcatctacatatagactgacaatcaatattttcccttcagtatgcttcacaaatagtgtatgctcatgtggacacttttcaaacttttgttgacagaag |
10781920 |
T |
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| Q |
321 |
taaacttaaatcttactataccatgctcttgatgtttgtttcaagtcatataaagcttttctcagcttgta |
391 |
Q |
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| T |
10781921 |
taagcttcaattttactataccaagctcttggagcttgctttaaaccatataaagcttttttcaacttgta |
10781991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 118 - 373
Target Start/End: Original strand, 46431407 - 46431662
Alignment:
| Q |
118 |
caagaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataattcttcacaatttgctttatatat |
217 |
Q |
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||||||||||| ||||||| || ||||| ||||| ||||||| |||||||| || |||| || || |||| |||| ||||||||||| | ||||||| |
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| T |
46431407 |
caagaaagtatctcatttttcccaaatcagtcatgacaaagtttttcttcatagaacacttgaagtcatcaattaatacttcacaatttccagtatatat |
46431506 |
T |
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| Q |
218 |
caaatcgtccacacacagatcgacaatcaaaatctttccttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacag |
317 |
Q |
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| T |
46431507 |
cagatcatccacatacaaactaacaattaagatcttgttttcagcatgctttacaaataaagtatgttaatgagggcatttctcaaaattctctttgcag |
46431606 |
T |
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| Q |
318 |
aaataaacttaaatcttactataccatgctcttgatgtttgtttcaagtcatataa |
373 |
Q |
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| T |
46431607 |
aagtaagcttctattttactataccatgctcttggtgcctgtttcaatccatataa |
46431662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 59240 - 59326
Alignment:
| Q |
257 |
ttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacagaaataaacttaaatcttactatacca |
343 |
Q |
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||||| |||||| ||||||| ||||||||||||| ||||||| ||||||||||||||| |||| || ||| |||||| |||||||| |
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| T |
59240 |
ttcaatatgttttacaaatagagtatgctcatgaggacatttatcaaagttttcttgatagaagtaggcttcaatctttctatacca |
59326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 59127 - 59176
Alignment:
| Q |
144 |
tctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaataa |
193 |
Q |
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|||||||||||||| ||||||||||| ||||| | ||| ||||||||||| |
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| T |
59127 |
tctgtcatagcaaaattcttcttcatagagcatttaaactcttcaaataa |
59176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 40610527 - 40610586
Alignment:
| Q |
106 |
ttacttcaacttcaagaaagtatttcattttcccaaaatctgtcatagcaaagttcttct |
165 |
Q |
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| T |
40610527 |
ttacttctacttcaagaaagtatctcatttttcccaaatctgtcatagcaaaattcttct |
40610586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 349
Target Start/End: Original strand, 7849802 - 7849894
Alignment:
| Q |
257 |
ttcaacatgtttcacaaatatagtatgctcatgatgacatttttcaaagttttcttgacagaaataaacttaaatcttactataccatgctct |
349 |
Q |
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||||||||| || ||||| | |||||| |||||| | ||||||||||| ||||||| ||||||||| ||| || ||||||||||| ||||| |
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| T |
7849802 |
ttcaacatgctttacaaacagagtatgttcatgagggcatttttcaaaattttctttgcagaaataagcttctattttactataccaggctct |
7849894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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