View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8581_low_16 (Length: 429)
Name: NF8581_low_16
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 3534863 - 3534457
Alignment:
| Q |
1 |
tagcttcatatcttctaaaaacagggcaatattgcattgggacgctaaaaagttggaatgaacgcaaaaccaaacatgctgtaaatttaaaagcaccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3534863 |
tagcttcatatcttctaaaaacagggcaatattgcattgggacgctaaaaagttggaatgaacgcaaaaccaaacatgctgtaaatttaaaagcaccatc |
3534764 |
T |
|
| Q |
101 |
taaatgatatcaccagtcaccatctctgcgaaattgcagccacataaataccgaaaaattcagaaacaaca---ttcacacaaataattctggcacattg |
197 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3534763 |
taaatgatatcaccagtcaccatct--------------------aaataccgaaaaattcagaaacaacaacattcacacaaataattctggcacattg |
3534684 |
T |
|
| Q |
198 |
cctgacatcgatactactcattcagaaataaataccaatagtaatgatattctcagtgaatatgaaaagcaaattttggaaatggcaactttttgtggct |
297 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3534683 |
cctgacatcaatactactcattcagaaataaataccaatagtaatgatattctcagtgaatatgaaaagcaaattttggaaatggcaactttttgtggct |
3534584 |
T |
|
| Q |
298 |
taactactacatgtaacttttcacctttgtggagacatcaaatataaccaaatagttgacatctctttccaaacactgcaagtttatgcttcatacattg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3534583 |
taactactacatgtaacttttcacctttgtggagacatcaaatataaccaaatagttgacatctctttccaaacactgcaagtttatgcttcatacattg |
3534484 |
T |
|
| Q |
398 |
tagtgtaacatgtctgatgtccatctc |
424 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
3534483 |
tagtgtaacatgtctgatgtctatctc |
3534457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University