View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8581_low_19 (Length: 393)
Name: NF8581_low_19
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 8817298 - 8816939
Alignment:
| Q |
16 |
ttcacaatagaaaccaattttgcaaaacaatggtgcaaccctaataagtttccaccccaaccctcacatctctcccaatttcacacctcactcacttcac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8817298 |
ttcacaatagaaaccaattttgcaaaacaatggtgcaaccctaataagtttccaccccaaccctcacatctctcccaatttcacacctcactcacttcac |
8817199 |
T |
|
| Q |
116 |
tgcttcaattcacaccnnnnnnn-tattaactattgattcaaacaaaataacctccttctcacgaaaagtataatatatagttcaaacaacaacttaagc |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8817198 |
tgcttcaattcacaccaaaaaaaatattaactattgattcaaacaaaataacctccttctcacgaaaagtataatatatagttcaaacaacaacttaagc |
8817099 |
T |
|
| Q |
215 |
atgattatgatataattagaaaaaatagaaacaacccataagactaaaaatcaataaaacactgaaaggaatcataaagttgagttttttacacgatggt |
314 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8817098 |
atgattatgatataattagaagaaatagaaacaacccataagactaaaaatcaataaaacactgaaaggaatcataaagttgagttttttacaagatggt |
8816999 |
T |
|
| Q |
315 |
agaaaaagagagtgagagaaaaattgaaccttttttcaccgccggtgtaatactcctgag |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8816998 |
agaaaaagagagtgagagaaaaattgaaccttttttcaccgccggtgtaatactcctgag |
8816939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University