View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_21 (Length: 372)

Name: NF8581_low_21
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_21
NF8581_low_21
[»] chr7 (5 HSPs)
chr7 (37-357)||(12546233-12546553)
chr7 (74-155)||(9107298-9107378)
chr7 (74-163)||(13311968-13312056)
chr7 (11-163)||(22567909-22568063)
chr7 (70-114)||(9427962-9428006)
[»] chr3 (3 HSPs)
chr3 (182-357)||(53016760-53016935)
chr3 (51-176)||(25594371-25594496)
chr3 (103-170)||(47945828-47945895)
[»] chr6 (5 HSPs)
chr6 (182-357)||(5241486-5241661)
chr6 (182-308)||(17451432-17451558)
chr6 (78-170)||(33968482-33968574)
chr6 (182-267)||(14826155-14826240)
chr6 (126-170)||(13098486-13098530)
[»] chr1 (10 HSPs)
chr1 (181-357)||(16503278-16503454)
chr1 (182-308)||(24432383-24432509)
chr1 (182-310)||(29991240-29991368)
chr1 (70-160)||(49820265-49820355)
chr1 (77-174)||(17033706-17033803)
chr1 (76-168)||(50589072-50589164)
chr1 (78-170)||(38544605-38544696)
chr1 (74-170)||(19598758-19598854)
chr1 (77-170)||(42374286-42374379)
chr1 (74-166)||(46603510-46603599)
[»] chr4 (6 HSPs)
chr4 (182-345)||(20669701-20669864)
chr4 (74-170)||(12296297-12296393)
chr4 (74-163)||(46487400-46487489)
chr4 (76-170)||(21983687-21983780)
chr4 (74-170)||(28966989-28967085)
chr4 (101-170)||(46698674-46698743)
[»] chr2 (8 HSPs)
chr2 (10-170)||(22884930-22885092)
chr2 (73-170)||(33788494-33788591)
chr2 (77-138)||(24308593-24308654)
chr2 (72-163)||(27740104-27740195)
chr2 (76-170)||(25504773-25504867)
chr2 (74-168)||(4472046-4472140)
chr2 (74-163)||(43816319-43816408)
chr2 (101-163)||(3745464-3745526)
[»] chr8 (2 HSPs)
chr8 (78-170)||(17720573-17720665)
chr8 (76-170)||(15906809-15906903)
[»] scaffold1613 (1 HSPs)
scaffold1613 (78-170)||(884-975)
[»] chr5 (5 HSPs)
chr5 (74-170)||(39184048-39184144)
chr5 (76-170)||(8731040-8731134)
chr5 (78-156)||(24072134-24072212)
chr5 (74-161)||(27713200-27713288)
chr5 (72-170)||(23426455-23426553)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 37 - 357
Target Start/End: Original strand, 12546233 - 12546553
Alignment:
Q  37 tacaaaaaccaattaaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaag 136  Q
    ||||||||||| |||||||||||||||| ||  | ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12546233 tacaaaaaccacttaaaaacgaaatccataacactcgtcgccactacttatcccaaaataacacccctctaaatgaaacactccgtcgtcatcacctaag 12546332  T
Q  137 ctgaaccactattctaaagatcaatcaacttccatcacatgtcgacatgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaa 236  Q
    |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12546333 ctgagccactattctaaagatcaatcaacttccaccacatctcgacatgttgtcttttggaaacatataatgttttcttccttgtcaaagtttaagtcaa 12546432  T
Q  237 ttccgtcaacttccactcctctttttactaaccccgatgtcgactattttcctagtgacacgtatgcaggttttgagacatatgcatgttcttctagtga 336  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12546433 ttccctcaacttccactcctctttttactaaccccgatgtcggctattttcctagtgacacgtatgcaggttttgagatatatgcatgttcttctagtga 12546532  T
Q  337 gcttccaacctcttctgatgt 357  Q
    |  |||||||||||| |||||    
T  12546533 gtatccaacctcttccgatgt 12546553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 9107378 - 9107298
Alignment:
Q  74 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaag 155  Q
    |||||||||||||||||||||||||  ||||||||||||||||| || || |||||||| ||| ||| ||||||||||||||    
T  9107378 tcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgagccactattctaaag 9107298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 13312056 - 13311968
Alignment:
Q  74 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 163  Q
    |||||||||| || |||||||||| |  ||||||||||||||||| |||| || |||||||||||||  |||||||||||| ||||||||    
T  13312056 tcgccactacacaccccaaaataa-acacctctaaatgaaacacttcgtcctcgtcacctaagctgagacactattctaaatatcaatca 13311968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 22567909 - 22568063
Alignment:
Q  11 acatcaccacctaaaacagactcttatacaaaa--accaattaaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctctaa 108  Q
    |||||||||||||||||||||||||  || |||  |||| | |||||||  ||||| ||    | || ||||||||||||| ||||||||| ||||  ||    
T  22567909 acatcaccacctaaaacagactctttcacgaaacaaccactgaaaaacggtatccataaccagcatcaccactactcatccaaaaataacaccccttaaa 22568008  T
Q  109 atgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 163  Q
    |||||||||   ||| || ||||| ||||||   |||||||||||||||||||||    
T  22568009 atgaaacaccatgtcctcgtcaccaaagctggggcactattctaaagatcaatca 22568063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 9427962 - 9428006
Alignment:
Q  70 cccgtcgccactactcatcccaaaataacatccctctaaatgaaa 114  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  9427962 cccgtcgtcactactcatccctaaatagcatccctctaaatgaaa 9428006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 182 - 357
Target Start/End: Complemental strand, 53016935 - 53016760
Alignment:
Q  182 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 281  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||     
T  53016935 catgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaatcccgtctacttccactcctctctttactaaccctgatgttgacc 53016836  T
Q  282 attttcctagtgacacgtatgcaggttttgagacatatgcatgttcttctagtgagcttccaacctcttctgatgt 357  Q
     |||||||||||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  53016835 tttttcctagtgacacacatgcaggttcttagacatatgcatgttcttctagtgagcttccaacctcttctgatgt 53016760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 25594371 - 25594496
Alignment:
Q  51 aaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattc 150  Q
    |||||||| |||||||   ||| ||||||||||||||||||| ||||||  |||||||||| ||||||||||| || || || ||| ||| |||||||||    
T  25594371 aaaaacgatatccaaaccacccatcgccactactcatcccaagataacactcctctaaatggaacactccgtcctcgtctccaaagttgagccactattc 25594470  T
Q  151 taaagatcaatcaacttccatcacat 176  Q
    ||||||||||||  |||||| |||||    
T  25594471 taaagatcaatccgcttccaccacat 25594496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 47945895 - 47945828
Alignment:
Q  103 ctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    ||||||||||||||||||  |  |||| ||||| |||| ||||||||| |||||||||| ||||||||    
T  47945895 ctctaaatgaaacactccagctgcatcccctaaactgagccactattcaaaagatcaattaacttcca 47945828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 182 - 357
Target Start/End: Complemental strand, 5241661 - 5241486
Alignment:
Q  182 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 281  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||     
T  5241661 catgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaatcccgtctacttccactcctctctttactaaccctgatgttgacc 5241562  T
Q  282 attttcctagtgacacgtatgcaggttttgagacatatgcatgttcttctagtgagcttccaacctcttctgatgt 357  Q
     |||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||||    
T  5241561 tttttcctagtgacacgcatgcaggttctaagacatatgcaggttcttctagtgagcttccaacctcttccgatgt 5241486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 182 - 308
Target Start/End: Original strand, 17451432 - 17451558
Alignment:
Q  182 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 281  Q
    |||||||||||||||||||||| |||||| |||||||||||||| |||   ||||||||||| |||||||||||| | ||||||||||| ||||| ||||    
T  17451432 catgttgtcttttgggaacataaaatgttctcttccttgtcaaattttgtttcaattccgtccacttccactcctttatttactaaccctgatgttgact 17451531  T
Q  282 attttcctagtgacacgtatgcaggtt 308  Q
    |||||  ||||||||| ||||||||||    
T  17451532 attttaatagtgacacatatgcaggtt 17451558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 33968482 - 33968574
Alignment:
Q  78 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||| | ||| || ||| ||| |||||||||||||||||||||| ||||||    
T  33968482 cactactcatcccaaaataacacccctctaaatgaaacactttgtccttatcgccaaagttgagccactattctaaagatcaatcagcttcca 33968574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 14826155 - 14826240
Alignment:
Q  182 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaa 267  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||| || || ||| |||| ||||| ||| ||||    
T  14826155 catgttgtcttttgggaacacataatgttctcttctttgtcaaagtttacgtcaatcccatctactaccacccctctctttgctaa 14826240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 13098486 - 13098530
Alignment:
Q  126 catcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||    
T  13098486 catcccctaagctgagccactattctaaagatcaatcatcttcca 13098530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 181 - 357
Target Start/End: Original strand, 16503278 - 16503454
Alignment:
Q  181 acatgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgac 280  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||   |||    
T  16503278 acatgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaattccgtctacttcgactcctctctttactaaccctgattctgac 16503377  T
Q  281 tattttcctagtgacacgtatgcaggttttgagacatatgcatgttcttctagtgagcttccaacctcttctgatgt 357  Q
      |||||| | ||||||  ||||||||| | |||||||||||  |||||||||||||||||||||||||||||||||    
T  16503378 ctttttcccattgacacacatgcaggttctaagacatatgcagattcttctagtgagcttccaacctcttctgatgt 16503454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 182 - 308
Target Start/End: Original strand, 24432383 - 24432509
Alignment:
Q  182 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 281  Q
    |||||||||||||||||||||| |||||| |||||||||||||| |||   ||||||||||| |||||||||||| | ||||||||||| ||||| ||||    
T  24432383 catgttgtcttttgggaacataaaatgttctcttccttgtcaaattttgtttcaattccgtccacttccactcctttatttactaaccctgatgttgact 24432482  T
Q  282 attttcctagtgacacgtatgcaggtt 308  Q
    |||||  ||||||||| ||||||||||    
T  24432483 attttaatagtgacacatatgcaggtt 24432509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 29991240 - 29991368
Alignment:
Q  182 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 281  Q
    |||||| ||||||| |||||||||||||| |||||||| ||||||||||| || || |  || |||||||||||| | ||||| |||| |||||| |||     
T  29991240 catgttatcttttgcgaacatataatgttctcttccttatcaaagtttaactcgatcctttctacttccactcctttctttacgaacctcgatgttgacc 29991339  T
Q  282 attttcctagtgacacgtatgcaggtttt 310  Q
     |||||||||| ||||  |||||||||||    
T  29991340 tttttcctagtaacacacatgcaggtttt 29991368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 49820355 - 49820265
Alignment:
Q  70 cccgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaa 160  Q
    ||||||||||| || |||||||||||| || |||||||||||||||||  |  ||||||||| |||| ||| |||||||||||||||||||    
T  49820355 cccgtcgccaccacacatcccaaaatatcacccctctaaatgaaacacctctacgtcatcacttaagatgagccactattctaaagatcaa 49820265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 17033803 - 17033706
Alignment:
Q  77 ccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttccatcac 174  Q
    |||||||| |||||||||||||| |||||| ||||||||||   ||| |||||||| ||| ||| ||| |||||||||||||||||| ||| ||||||    
T  17033803 ccactactaatcccaaaataacacccctctgaatgaaacaccatgtcctcatcaccaaagttgagccattattctaaagatcaatcagcttgcatcac 17033706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 50589072 - 50589164
Alignment:
Q  76 gccactactcatcccaaaa-taacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttc 168  Q
    ||||||||||| ||||||| ||||  |||||||||||||||||||||||  ||||||||||| ||| | ||||||| |||||||||||||||||    
T  50589072 gccactactcaacccaaaaataacc-ccctctaaatgaaacactccgtctgcatcacctaagttgagctactattccaaagatcaatcaacttc 50589164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 38544605 - 38544696
Alignment:
Q  78 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||||||||||||||  ||||| ||||||||||||||||| ||| | |||||| | || |||| |||||||||||||||||||||| ||||||    
T  38544605 cactactcatcccaacgtaacacccctctaaatgaaacac-ccgccctcatcagcaaaactgagccactattctaaagatcaatcatcttcca 38544696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 19598854 - 19598758
Alignment:
Q  74 tcgccactactcatcccaaaataacatccctctaaatgaaacactc-cgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    ||||||||||||| |||||||||||  ||||||||| |||||||||  | ||| ||| | |||| ||| ||  |||||||||||||||||||||||||    
T  19598854 tcgccactactcaacccaaaataacccccctctaaaagaaacactctagccgt-atcccataagttgagccgttattctaaagatcaatcaacttcca 19598758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 42374379 - 42374286
Alignment:
Q  77 ccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||||||| | ||||| |||||| |||| |||| | ||| |  |||| |||||||| ||| ||| |||||||||||||||||||||| ||||||    
T  42374379 ccactactgaacccaagataacacccctataaaagcaactcctcgtcctcatcaccaaagttgagccactattctaaagatcaatcagcttcca 42374286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 46603599 - 46603510
Alignment:
Q  74 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaact 166  Q
    |||||||||||| ||||||||||||| |||||||||| ||||| |  ||| | |||||| ||| ||| |||  |||||| |||||||||||||    
T  46603599 tcgccactactcttcccaaaataacacccctctaaat-aaacattatgtccttatcaccaaagttgagcca--attctacagatcaatcaact 46603510  T

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Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 182 - 345
Target Start/End: Complemental strand, 20669864 - 20669701
Alignment:
Q  182 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccccgatgtcgact 281  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || |  |||||||| ||||||||||| |||||||| |    
T  20669864 catgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcaatcccgtctacctatactcctctctttactaaccctgatgtcgatt 20669765  T
Q  282 attttcctagtgacacgtatgcaggttttgagacatatgcatgttcttctagtgagcttccaac 345  Q
     ||||||||||||||   ||||||||| ||||||||||||| |||||||||||||| |||||||    
T  20669764 tttttcctagtgacaaacatgcaggttctgagacatatgcaggttcttctagtgagtttccaac 20669701  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 12296393 - 12296297
Alignment:
Q  74 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||| ||| || ||||||    
T  12296393 tcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaagttgagccactactctaaagaacaaccagcttcca 12296297  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 46487489 - 46487400
Alignment:
Q  74 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 163  Q
    |||||||||||||||| ||||||| ||||||||||| ||||| ||||||| ||| ||||||| || | |||||||| |||||||||||||    
T  46487489 tcgccactactcatcctaaaataaaatccctctaaacgaaacgctccgtcctcaacacctaaactaagccactattataaagatcaatca 46487400  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 21983687 - 21983780
Alignment:
Q  76 gccactactcatcccaaaataacatccctctaaatgaaacactcc-gtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    ||||||||||| |||||||||||  || | ||||||||||||||| |||| |||| ||||||||||  ||||||||||||||||||||||||||||    
T  21983687 gccactactcaacccaaaataacc-ccttttaaatgaaacactccagtcg-catcccctaagctgagtcactattctaaagatcaatcaacttcca 21983780  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 28967085 - 28966989
Alignment:
Q  74 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||  |  | || | |||| ||| ||||||||||| |||||||||| ||||||    
T  28967085 tcgccactactcagcccaaaataacctccctttaaatgaaacactccagccgcgtcccataagatgagccactattctagagatcaatcagcttcca 28966989  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 46698674 - 46698743
Alignment:
Q  101 ccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||||||||||||||||   ||| |||||||| |||| || |||||||||||||||| ||||| ||||||    
T  46698674 ccctctaaatgaaacaccttgtcctcatcaccaaagccgagccactattctaaagatgaatcagcttcca 46698743  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 22884930 - 22885092
Alignment:
Q  10 aacatcaccacctaaaacagactcttatacaaaa--accaattaaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctcta 107  Q
    |||||||||||||||||||||||| |  || |||  |||| | | |||||||||||| ||  |||||||||||| ||  ||||||||||||| |||||||    
T  22884930 aacatcaccacctaaaacagactccttcacgaaacgaccactgacaaacgaaatccataacccccgtcgccactgcttgtcccaaaataacacccctcta 22885029  T
Q  108 aatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||||||||| ||||| |||||||||||   || ||||||||||| |||||||||||||||||    
T  22885030 aatgaaacacaccgtcctcatcacctaaaacgagccactattctatagatcaatcaacttcca 22885092  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 33788494 - 33788591
Alignment:
Q  73 gtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  33788494 gtcgccactactcgtcccaaaataacacccctctaaatgaaacaccccgtcctcatcacctaagctgagccactaatctatagatcaatcagcttcca 33788591  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 24308593 - 24308654
Alignment:
Q  77 ccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagct 138  Q
    ||||||||||||||||||||||| |||||||||| ||||||| | || ||||||||||||||    
T  24308593 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacctaagct 24308654  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 27740195 - 27740104
Alignment:
Q  72 cgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 163  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||   ||| |||   |||||| ||| ||||||||| | ||||||||||    
T  27740195 cgtcgccactactcatcccagaataacacccctctaaatgaaacacattgtcctcaatgcctaagttgagccactattccatagatcaatca 27740104  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 25504773 - 25504867
Alignment:
Q  76 gccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||||||||||||||||||||||| ||||||||||||||||     || |||||||| ||| ||| || |||||||||| |||||| | ||||||    
T  25504773 gccactactcatcccaaaataacacccctctaaatgaaacatcatatcctcatcaccaaagttgagccgctattctaaatatcaattagcttcca 25504867  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 4472140 - 4472046
Alignment:
Q  74 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttc 168  Q
    |||||||||  || |||||||||||| |||||||||| ||  || ||  |||| |||| |||| ||| |||||||||||||||||||||| ||||    
T  4472140 tcgccactagacaacccaaaataacacccctctaaataaattacccctacgtcgtcacttaagttgagccactattctaaagatcaatcagcttc 4472046  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 43816319 - 43816408
Alignment:
Q  74 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 163  Q
    |||||||||||| |||| ||| ||||  ||||||||||||||||   ||| |||||||  || | || ||||||||||||||||||||||    
T  43816319 tcgccactactcctcccgaaaaaacactcctctaaatgaaacaccttgtcctcatcactaaaacagagccactattctaaagatcaatca 43816408  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 3745526 - 3745464
Alignment:
Q  101 ccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 163  Q
    |||||||||||||||||   ||| || ||||| | ||||| ||||||||||||||||||||||    
T  3745526 ccctctaaatgaaacaccttgtcctcgtcaccgatgctgagccactattctaaagatcaatca 3745464  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 17720573 - 17720665
Alignment:
Q  78 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    ||||||||| |||||||  | | ||||||||||||||||||||||| ||||||| |||  ||| |||||||||||||||||||||||||||||    
T  17720573 cactactcaccccaaaaataaacccctctaaatgaaacactccgtcctcatcacttaatttgagccactattctaaagatcaatcaacttcca 17720665  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 15906903 - 15906809
Alignment:
Q  76 gccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||||||||||||||||||||||| | |||||||| |||||| | ||| |||||||||||| ||| | ||||||||| | |||||||| ||||||    
T  15906903 gccactactcatcccaaaataacacctctctaaataaaacacactgtcctcatcacctaagttgagctactattctataaatcaatcatcttcca 15906809  T

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Target: scaffold1613 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 884 - 975
Alignment:
Q  78 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||||||||||||||  ||||| ||||||||||||||||| ||| | |||||| | || |||| |||||||||||||||||||||| ||||||    
T  884 cactactcatcccaacgtaacacccctctaaatgaaacac-ccgccctcatcagcaaaactgagccactattctaaagatcaatcatcttcca 975  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 39184048 - 39184144
Alignment:
Q  74 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    ||||||||||| |||||||||||||| |||||| || ||| |||   ||| ||| |||| ||||||| ||||||||| |||||||||||| ||||||    
T  39184048 tcgccactacttatcccaaaataacacccctcttaacgaatcaccatgtcctcaacaccaaagctgagccactattcaaaagatcaatcagcttcca 39184144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 8731134 - 8731040
Alignment:
Q  76 gccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    |||||||||||||||||||||||| ||||||||||||||||     || |||||||| ||| ||| || |||||||||| |||||| | ||||||    
T  8731134 gccactactcatcccaaaataacacccctctaaatgaaacatcatatcctcatcaccaaagttgagccgctattctaaatatcaattagcttcca 8731040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 24072134 - 24072212
Alignment:
Q  78 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaaga 156  Q
    ||||||||||||||||||||||| |||||||||||||||| || || || ||||  ||| |||  ||||||||||||||    
T  24072134 cactactcatcccaaaataacattcctctaaatgaaacaccccttcctcgtcacgaaagttgagtcactattctaaaga 24072212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 27713288 - 27713200
Alignment:
Q  74 tcgccactactcatcccaaaataacatccc-tctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaat 161  Q
    ||||||||||||| |||||||||||  ||| |||||||||||||||||  |  |||| | |||| ||| ||||||||||||||||||||    
T  27713288 tcgccactactcaacccaaaataaccccccctctaaatgaaacactccagccgcatcccataagttgagccactattctaaagatcaat 27713200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 23426553 - 23426455
Alignment:
Q  72 cgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 170  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||   |||  || | |||||||||| |||| |||| |  ||||||||| ||||||    
T  23426553 cgtcgccactactcatccccagataacaaccctctaaatgaaacacattgtccgcaactcctaagctgagccacaattccatggatcaatcagcttcca 23426455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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