View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_30 (Length: 335)
Name: NF8581_low_30
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 40801888 - 40801570
Alignment:
| Q |
1 |
agtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtggccaaggacgacaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| |
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| T |
40801888 |
agtatgaaatagaaaatcattttgaacacttttttcttgattaatggtagaaccttgatgcacattgatacttttcgccgatggccaatgacgacaaacc |
40801789 |
T |
|
| Q |
101 |
ttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801788 |
ttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatcac |
40801689 |
T |
|
| Q |
201 |
aatcttagtttttccattacagaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactttgtttcaggccattcctta |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40801688 |
aatcttagtttttccattacaaaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactctgtttcaggccattcctta |
40801589 |
T |
|
| Q |
301 |
agaaactataatccctctg |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
40801588 |
agaaactataatccctctg |
40801570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 18701144 - 18701462
Alignment:
| Q |
1 |
agtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtggccaaggacgacaaacc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18701144 |
agtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaacc |
18701243 |
T |
|
| Q |
101 |
ttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatcac |
200 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18701244 |
atccccttttctcatttctcttcctcacaagagaaagaccaacgttctaacaccgactctatgtggctttcatagtcctgctgcctatatcaaatatcac |
18701343 |
T |
|
| Q |
201 |
aatcttagtttttccattacagaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactttgtttcaggccattcctta |
300 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
18701344 |
aatcttagattttccattacaaaaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactctatttcaggccattcctta |
18701443 |
T |
|
| Q |
301 |
agaaactataatccctctg |
319 |
Q |
| |
|
|||||| ||| |||||||| |
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| T |
18701444 |
agaaacaatattccctctg |
18701462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 23126218 - 23126087
Alignment:
| Q |
3 |
tatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtggccaaggacgacaaacctt |
102 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23126218 |
tatgaaatagaaaatcattttgaatactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaacctt |
23126119 |
T |
|
| Q |
103 |
ccccttttctcatttctcttcctcaaaggaga |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
23126118 |
ccccttttctcatttctcttcctcaaaggaga |
23126087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 318
Target Start/End: Original strand, 5461023 - 5461196
Alignment:
| Q |
145 |
ttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatcacaatcttagtttttccattacagaaacattgttgtgatgctccgt |
244 |
Q |
| |
|
|||||||||| ||| | || ||||| ||||| ||| ||| | || || ||||| |||||| ||||||||||||||| |||| |||||| | ||||||| |
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| T |
5461023 |
ttccaacaccgactatgtgctgcttttatagtactgttgcatgtaccatatatcccaatctcagtttttccattacaaaaacgttgttgcaaagctccgt |
5461122 |
T |
|
| Q |
245 |
tgatattatgtatttcttcatatttttgttattactttgtttcaggccattccttaagaaactataatccctct |
318 |
Q |
| |
|
|||| | |||||||| ||||||| | || ||||||||| || ||||||| ||||||| ||||||||||| |
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| T |
5461123 |
cgataatccaaatttcttcctatttttttgatctctttgtttcgggacattcctcaagaaaccataatccctct |
5461196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 50379400 - 50379480
Alignment:
| Q |
223 |
aaacattgttgtgatgctccgttgatattatgtatttcttcatatttttgttattactttgtttcaggccattccttaaga |
303 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||||||||||| | |||||||| |||||||| |||| |
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| T |
50379400 |
aaacattgttgcgatgctccgttgatattcccgatttcttcctatttttgttatctcactgtttcagaccattcctcaaga |
50379480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 24864640 - 24864685
Alignment:
| Q |
42 |
taatggtagaaccttgatgcacattgatacttttcgtcggtggccaa |
88 |
Q |
| |
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||||||||||||||||||||| |||| ||| |||||||||||||||| |
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| T |
24864640 |
taatggtagaaccttgatgcaaattgttac-tttcgtcggtggccaa |
24864685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 6508037 - 6508122
Alignment:
| Q |
99 |
ccttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcct |
186 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||| |||||||||| || | ||||| |||||||| |||| ||| ||| ||||||||| |
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| T |
6508037 |
ccttccccttttttcatttctctatctcgaaggcgaaagaccaa--tttccacaccgactctatgcggctgtcacagtactgctgcct |
6508122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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