View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_31 (Length: 334)
Name: NF8581_low_31
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 148 - 326
Target Start/End: Complemental strand, 21794203 - 21794024
Alignment:
| Q |
148 |
tttcattagcaattaaatcatttatacacgtcggtacatcatcaaagatatagaagctaagtaaggatgtggctgcctatgttgatttgtg-ttaacctc |
246 |
Q |
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| T |
21794203 |
tttcattagcaattaaattatttatacacgtcggtacatcatccaagatatagaagctaggtaaggatttgtctgcctatactgatttgtggttaacctt |
21794104 |
T |
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| Q |
247 |
attcacttgtctcttaatgaactcaaggtgaaagtttgttaaataaagagaacaatagctcaaaattcggtgatgtccat |
326 |
Q |
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| T |
21794103 |
attgacttgtctcttaatgaactcaacatgaaagtttgttaaataaagagaacaatagctcaaaattcggtgatgtccat |
21794024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 21794308 - 21794206
Alignment:
| Q |
1 |
tcaaggtgaattctttggatagtgcattgtgttgattttcgtgaagtgtttagatatagaccgagttatatcaattaaattgg---tcactatgacatta |
97 |
Q |
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| T |
21794308 |
tcaaggtgaattctttggatagtgcattgtgttgattttcgtgaagtgtttagatatagaccgagttatatcaattaaattggtgatcaccatgacatta |
21794209 |
T |
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| Q |
98 |
tca |
100 |
Q |
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| T |
21794208 |
tca |
21794206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 303
Target Start/End: Original strand, 9834473 - 9834630
Alignment:
| Q |
147 |
atttcattagcaattaaatcatttatacacgtcggtacatcatcaaagatatagaagctaagtaaggatgtggctgcctatgttgatttgt-gttaacct |
245 |
Q |
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| T |
9834473 |
atttcattagcaatcaaattatttatacatgtcggtaaatcatcaaaaatacgggagctaagtaaagacgtggatgcatttgttaattcgtggacaacct |
9834572 |
T |
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| Q |
246 |
cattcacttgtctcttaatgaactcaaggtgaaagtttgttaaataaagagaacaata |
303 |
Q |
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| T |
9834573 |
cgttcgcttgtcttctagtaaacccaacacgagagtttgttaaataaagagaacaata |
9834630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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