View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_32 (Length: 331)

Name: NF8581_low_32
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_32
NF8581_low_32
[»] chr6 (11 HSPs)
chr6 (18-331)||(4324988-4325301)
chr6 (249-321)||(30536879-30536951)
chr6 (254-330)||(8420115-8420192)
chr6 (259-306)||(3738200-3738247)
chr6 (254-304)||(33737831-33737881)
chr6 (279-320)||(10353705-10353746)
chr6 (249-306)||(12111066-12111123)
chr6 (251-327)||(2460067-2460143)
chr6 (261-321)||(7351597-7351657)
chr6 (269-321)||(27857442-27857494)
chr6 (254-298)||(31594296-31594340)
[»] chr8 (24 HSPs)
chr8 (248-320)||(9700086-9700158)
chr8 (249-311)||(16162854-16162916)
chr8 (253-321)||(1664453-1664521)
chr8 (255-330)||(6496811-6496886)
chr8 (248-321)||(2487921-2487994)
chr8 (248-321)||(7918695-7918767)
chr8 (253-321)||(10062059-10062127)
chr8 (246-306)||(43368611-43368671)
chr8 (247-310)||(1117402-1117465)
chr8 (252-311)||(5349503-5349562)
chr8 (246-305)||(7008698-7008757)
chr8 (252-327)||(26479863-26479938)
chr8 (250-321)||(43393687-43393758)
chr8 (259-321)||(6950406-6950468)
chr8 (251-317)||(8535971-8536037)
chr8 (250-328)||(10075468-10075546)
chr8 (246-320)||(14926893-14926967)
chr8 (254-304)||(18331815-18331865)
chr8 (250-320)||(28769254-28769324)
chr8 (266-327)||(24326109-24326170)
chr8 (253-321)||(1889053-1889121)
chr8 (253-321)||(1892142-1892210)
chr8 (254-306)||(10488562-10488614)
chr8 (248-316)||(42508540-42508608)
[»] chr2 (25 HSPs)
chr2 (252-311)||(41170704-41170763)
chr2 (250-311)||(37276838-37276899)
chr2 (249-321)||(1318320-1318391)
chr2 (246-301)||(1830143-1830198)
chr2 (249-315)||(37419581-37419647)
chr2 (261-321)||(3673892-3673953)
chr2 (254-327)||(22878176-22878249)
chr2 (254-327)||(35329737-35329810)
chr2 (253-321)||(3078526-3078594)
chr2 (254-321)||(13866962-13867029)
chr2 (246-321)||(13869019-13869094)
chr2 (254-321)||(19978031-19978098)
chr2 (254-317)||(33197180-33197243)
chr2 (246-292)||(2416426-2416472)
chr2 (247-285)||(10619132-10619170)
chr2 (253-327)||(15120261-15120335)
chr2 (256-306)||(21616581-21616631)
chr2 (261-331)||(38078336-38078406)
chr2 (248-321)||(3059200-3059273)
chr2 (248-321)||(9996822-9996895)
chr2 (250-311)||(15370238-15370299)
chr2 (256-317)||(43985297-43985358)
chr2 (253-321)||(6547973-6548041)
chr2 (253-321)||(8017518-8017586)
chr2 (250-306)||(40759259-40759315)
[»] chr7 (15 HSPs)
chr7 (253-330)||(29287302-29287378)
chr7 (250-321)||(20547305-20547376)
chr7 (254-321)||(47041958-47042025)
chr7 (248-321)||(529446-529519)
chr7 (244-321)||(1418503-1418580)
chr7 (253-306)||(28691754-28691807)
chr7 (254-302)||(7087062-7087110)
chr7 (253-292)||(24975989-24976028)
chr7 (247-290)||(35808862-35808905)
chr7 (254-316)||(23214944-23215006)
chr7 (250-311)||(8427107-8427168)
chr7 (253-306)||(29363607-29363660)
chr7 (248-321)||(33894711-33894784)
chr7 (256-329)||(39542221-39542294)
chr7 (254-306)||(40598404-40598456)
[»] chr3 (23 HSPs)
chr3 (249-311)||(44014712-44014774)
chr3 (249-320)||(51929826-51929897)
chr3 (280-327)||(1810055-1810102)
chr3 (254-321)||(50211819-50211886)
chr3 (253-311)||(37138376-37138434)
chr3 (246-327)||(32663716-32663797)
chr3 (260-321)||(41848641-41848702)
chr3 (246-302)||(49465576-49465632)
chr3 (253-321)||(52323812-52323880)
chr3 (254-321)||(20210847-20210914)
chr3 (252-327)||(49845457-49845532)
chr3 (253-327)||(11041144-11041218)
chr3 (248-321)||(3775764-3775837)
chr3 (250-327)||(22667481-22667558)
chr3 (250-327)||(22724120-22724197)
chr3 (246-327)||(25459541-25459622)
chr3 (250-298)||(20192521-20192569)
chr3 (246-306)||(35708387-35708447)
chr3 (246-286)||(36769874-36769914)
chr3 (271-327)||(39311615-39311671)
chr3 (277-321)||(45590735-45590779)
chr3 (249-321)||(50015970-50016042)
chr3 (252-304)||(54258688-54258740)
[»] chr1 (21 HSPs)
chr1 (255-321)||(6659764-6659830)
chr1 (250-327)||(32515356-32515433)
chr1 (248-316)||(10199321-10199389)
chr1 (247-327)||(26866391-26866471)
chr1 (254-329)||(28467509-28467584)
chr1 (249-311)||(9602568-9602630)
chr1 (252-306)||(33723299-33723353)
chr1 (246-311)||(24460312-24460377)
chr1 (256-309)||(29793619-29793672)
chr1 (255-311)||(24417655-24417711)
chr1 (246-329)||(38867744-38867825)
chr1 (260-319)||(4200320-4200379)
chr1 (256-321)||(30257767-30257833)
chr1 (277-327)||(30457984-30458034)
chr1 (256-321)||(5157156-5157221)
chr1 (257-305)||(2522696-2522744)
chr1 (246-306)||(15558310-15558370)
chr1 (247-311)||(29793851-29793915)
chr1 (246-322)||(40751033-40751108)
chr1 (255-327)||(42550273-42550345)
chr1 (280-308)||(49282658-49282686)
[»] chr5 (18 HSPs)
chr5 (253-326)||(34198500-34198573)
chr5 (253-321)||(10638453-10638521)
chr5 (256-321)||(31723889-31723954)
chr5 (250-311)||(40335788-40335849)
chr5 (248-330)||(42180998-42181080)
chr5 (254-326)||(19627553-19627625)
chr5 (252-300)||(26004914-26004962)
chr5 (254-306)||(36796626-36796678)
chr5 (256-330)||(2092435-2092508)
chr5 (239-292)||(3932580-3932633)
chr5 (248-309)||(9174912-9174973)
chr5 (249-330)||(28586680-28586761)
chr5 (246-327)||(29336708-29336789)
chr5 (256-300)||(11615575-11615619)
chr5 (256-304)||(14706205-14706253)
chr5 (252-292)||(32010058-32010098)
chr5 (247-327)||(35135564-35135644)
chr5 (255-327)||(39257314-39257386)
[»] scaffold0199 (1 HSPs)
scaffold0199 (253-321)||(6894-6962)
[»] chr4 (23 HSPs)
chr4 (253-304)||(28615435-28615486)
chr4 (254-309)||(56186817-56186872)
chr4 (246-319)||(7367965-7368038)
chr4 (249-297)||(22662165-22662213)
chr4 (249-297)||(22666644-22666692)
chr4 (246-304)||(22772387-22772445)
chr4 (260-321)||(18628478-18628539)
chr4 (256-313)||(50746067-50746124)
chr4 (253-321)||(17975255-17975323)
chr4 (253-320)||(18512433-18512500)
chr4 (241-292)||(25571372-25571423)
chr4 (257-311)||(1017122-1017176)
chr4 (256-330)||(25896859-25896933)
chr4 (246-284)||(32769500-32769538)
chr4 (254-327)||(9316603-9316676)
chr4 (253-318)||(11264388-11264453)
chr4 (248-321)||(18020043-18020116)
chr4 (246-327)||(32741182-32741263)
chr4 (253-297)||(9720572-9720616)
chr4 (257-321)||(10365859-10365923)
chr4 (285-321)||(11877899-11877935)
chr4 (251-327)||(27123268-27123344)
chr4 (253-305)||(32071963-32072015)
[»] scaffold0141 (1 HSPs)
scaffold0141 (250-327)||(9693-9770)
[»] scaffold0020 (1 HSPs)
scaffold0020 (249-310)||(159887-159948)


Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 4324988 - 4325301
Alignment:
Q  18 ggttgtaatctgcaggatgggaaagaatggttctacaaatcttgtttcttggtcctgctaatcttttggagcctaatgccagctttgaacaaatgtcaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4324988 ggttgtaatctgcaggatgggaaagaatggttctacaaatcttgtttcttggtcctgctaatcttttggagcctaatgccagctttgaacaaatgtcaga 4325087  T
Q  118 gaagttgattgtttcacctatcgtcaagactctggtcttcagcaaagttcctgaaaaggtaatatctttctgtcgtatcactacatttccactaatcaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4325088 gaagttgattgtttcacctatcgtcaagactctggtcttcagcaaagttcctgaaaaggtaatatctttctgtcgtatcactgcatttccactaatcaaa 4325187  T
Q  218 ttgctatctagttatacctaatatagtgttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4325188 ttgctatctagttatacctaatatagtgttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgacag 4325287  T
Q  318 cttagggaaatagt 331  Q
    ||||||||||||||    
T  4325288 cttagggaaatagt 4325301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 30536879 - 30536951
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||  |||| | ||||| ||||||||| ||||    
T  30536879 gggcctgtttggattgacttatttgagtttatctacttacataagtacttattagactgtttgtgagaactta 30536951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 8420115 - 8420192
Alignment:
Q  254 tgtttggattgacta-attttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaatag 330  Q
    ||||||||||||||  |||| || ||||||| | |||||||||||||||||||| || |||||||||||  |||||||    
T  8420115 tgtttggattgactttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatag 8420192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 3738247 - 3738200
Alignment:
Q  259 ggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    ||||||||| |||| ||||||||||||| ||||| |||||||||||||    
T  3738247 ggattgacttatttgagtttatctactagcataagcacttgtgagact 3738200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 33737881 - 33737831
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgaga 304  Q
    |||| ||||||||| |||| ||||||||||||| |||||||||||| ||||    
T  33737881 tgttaggattgacttatttgagtttatctactaccataaacacttgagaga 33737831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 10353705 - 10353746
Alignment:
Q  279 atctactaacataaacacttgtgagactatttgtgagagctt 320  Q
    |||||||||||||| ||||||||||||| |||| ||||||||    
T  10353705 atctactaacataagcacttgtgagactgtttgggagagctt 10353746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 12111123 - 12111066
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    |||||| |||||||||||| |||| || |||||||||| ||||| |||||| ||||||    
T  12111123 gggcctatttggattgacttatttgagcttatctactagcataagcacttgcgagact 12111066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 2460067 - 2460143
Alignment:
Q  251 gcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||||||||||| ||| |||| || ||||  |||| |||||  |||||||||||| |||| ||||||||| |||||    
T  2460067 gcctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaa 2460143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 7351597 - 7351657
Alignment:
Q  261 attgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||| |||| |||||||||||| |||||| ||||||||||| | ||| ||||| ||||    
T  7351597 attgacttatttgagtttatctactgacataagcacttgtgagattgtttatgagaactta 7351657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 27857494 - 27857442
Alignment:
Q  269 attttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||| |||||||||||| ||||| |||||||||| ||| |||| |||||||||    
T  27857494 atttgagtttatctactgacatagacacttgtgaaactgtttgggagagctta 27857442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 31594296 - 31594340
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacactt 298  Q
    |||||||||||||| ||||  ||||||||||| ||||||||||||    
T  31594296 tgtttggattgacttatttgtgtttatctacttacataaacactt 31594340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 248 - 320
Target Start/End: Complemental strand, 9700158 - 9700086
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctt 320  Q
    |||||||||||||||| ||| |||| || |||||||||| |||||||||||||||||||||||| ||||||||    
T  9700158 agggcctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagctt 9700086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 16162916 - 16162854
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    |||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||| ||||    
T  16162916 gggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttg 16162854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 1664521 - 1664453
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||| ||| |||| |||| ||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  1664521 ctgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagctta 1664453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 6496811 - 6496886
Alignment:
Q  255 gtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaatag 330  Q
    |||||||||||||  ||| ||||||||||||||||||| |||||||| |||| |||| || |||||| ||||||||    
T  6496811 gtttggattgacttgtttgagtttatctactaacataatcacttgtgtgactgtttgggaaagcttatggaaatag 6496886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 2487921 - 2487994
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||| ||||||||||| || |||| |||| ||||||| |||||| ||||||||||||| |||| |||| ||||    
T  2487921 agggcatgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaactta 2487994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 7918695 - 7918767
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||||| ||||| || ||| |  |||||||||| ||||||||||||||||||| |||| |||||||||    
T  7918695 agggcctgtttgaattgatta-tttaaacttatctactagcataaacacttgtgagactgtttgggagagctta 7918767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 10062059 - 10062127
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||||| || |||| || |||||||||||||| |||||||  || |||||||| |||||||||    
T  10062059 ctgtttggattggcttatttgagcttatctactaacatcaacacttacgaaactatttgggagagctta 10062127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 43368611 - 43368671
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    ||||| |||||||||||||||| |||| |  |||||||||||||||| || ||||||||||    
T  43368611 ttaggacctgtttggattgacttatttgatcttatctactaacataagcatttgtgagact 43368671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 1117465 - 1117402
Alignment:
Q  247 tagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactattt 310  Q
    |||||| |||||||||||||| | || |  |||| ||||| |||||||||||||||||||||||    
T  1117465 tagggcttgtttggattgacttacttgaacttatatactagcataaacacttgtgagactattt 1117402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 5349503 - 5349562
Alignment:
Q  252 cctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    |||||||||||||||| |||| ||| |||||||||||| ||  |||||||| ||||||||    
T  5349503 cctgtttggattgacttatttgagtatatctactaacacaagaacttgtgaaactatttg 5349562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 7008757 - 7008698
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagac 305  Q
    |||| ||||||||| ||||||| |||| ||||||||||||  ||||| ||||||||||||    
T  7008757 ttagagcctgtttgaattgacttatttgagtttatctactggcataagcacttgtgagac 7008698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 26479938 - 26479863
Alignment:
Q  252 cctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||||||||||||||| |||| || ||||||| | ||| ||  |||||||| |||||||| ||||||||| |||||    
T  26479938 cctgtttggattgacttatttaagcttatctattgacacaaggacttgtgaaactatttgcgagagcttatggaaa 26479863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 43393687 - 43393758
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||| |||||||||||| |||| || |||||||||  || |||||||| ||||||| |||| |||||||||    
T  43393687 ggcctatttggattgacttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagctta 43393758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 6950468 - 6950406
Alignment:
Q  259 ggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||| |||| ||||||||||||  |||||||| |||||||| | |||| |||||||||    
T  6950468 ggattgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagctta 6950406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 8535971 - 8536037
Alignment:
Q  251 gcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagag 317  Q
    |||| ||||||||| ||||||| | |||||||||| ||||||  |||||||||||| |||| |||||    
T  8535971 gcctttttggattggctaatttgaatttatctactgacataagtacttgtgagactgtttgggagag 8536037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 328
Target Start/End: Original strand, 10075468 - 10075546
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaat 328  Q
    ||||||||| |||| ||| |||| ||||||||||||  |||||| ||||| |||||| |||  ||||||||| ||||||    
T  10075468 ggcctgtttcgattaacttatttgagtttatctactggcataaatacttgcgagactgtttaagagagcttatggaaat 10075546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 14926893 - 14926967
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctt 320  Q
    ||||||| |||||||||||||| |||| |  |||| ||||  ||||| ||||||||||||| |||| ||||||||    
T  14926893 ttagggcttgtttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagagctt 14926967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 18331865 - 18331815
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgaga 304  Q
    |||||||||||||| |||| |  |||||||||||||||| |||||||||||    
T  18331865 tgtttggattgacttatttgatcttatctactaacataagcacttgtgaga 18331815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 28769254 - 28769324
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctt 320  Q
    ||||||||| ||||| || |||||||  ||||||||  ||||| ||||||||||| |||||| ||||||||    
T  28769254 ggcctgttttgattgtcttattttaggctatctactggcataagcacttgtgagattatttgagagagctt 28769324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 24326170 - 24326109
Alignment:
Q  266 ctaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||||| || |||||||||  ||||| ||||||||||||| |||| ||||||||| |||||    
T  24326170 ctaatttgagcttatctactggcataagcacttgtgagactgtttgggagagcttatggaaa 24326109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 1889053 - 1889121
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||| ||| |||| |||| ||||||||||||  ||||||||||| ||||||| |||| || ||||||    
T  1889053 ctgtttagatggacttatttgagtttatctactggcataaacacttttgagactgtttgggaaagctta 1889121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 1892142 - 1892210
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||| |||||||| |||| |||||||||||   ||||||||||||||||| | ||||  ||||||||    
T  1892142 ctgtttagattgacttatttgagtttatctaccgtcataaacacttgtgagattgtttggcagagctta 1892210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 10488614 - 10488562
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    ||||||||||| || |||| || ||||| |||||||||||||| |||||||||    
T  10488614 tgtttggattggcttatttgagcttatcaactaacataaacacatgtgagact 10488562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 42508540 - 42508608
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgaga 316  Q
    |||| ||| ||||||||||| ||| ||| || |||||  ||||||||||||||||| ||||||| ||||    
T  42508540 agggtctgcttggattgacttattatagcttctctaccgacataaacacttgtgaggctatttgggaga 42508608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 41170763 - 41170704
Alignment:
Q  252 cctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||    
T  41170763 cctgtttggattggcttatttgagtttatctactaacataaacacttgtgagactatttg 41170704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 37276899 - 37276838
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    ||||||||||||| |||| |||| |||||||||||||| |||| ||||||||||||| ||||    
T  37276899 ggcctgtttggatcgacttatttaagtttatctactaatataagcacttgtgagactgtttg 37276838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 1318391 - 1318320
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||| ||||| |||||| || |||||||||  ||||| ||||||||||||| ||||||||||||||    
T  1318391 gggcctgtttgaattgagtaatttgagattatctactg-cataagcacttgtgagactgtttgtgagagctta 1318320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 1830198 - 1830143
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtg 301  Q
    |||||||||||||||||||||| |||| ||||||| |||| |||||| ||||||||    
T  1830198 ttagggcctgtttggattgacttatttgagtttatttactgacataagcacttgtg 1830143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 315
Target Start/End: Original strand, 37419581 - 37419647
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgag 315  Q
    |||| |||||||||||||| |||| |||||||||||| | |||| ||||||||| ||| ||||||||    
T  37419581 gggcatgtttggattgacttatttgagtttatctacttatataagcacttgtgaaactctttgtgag 37419647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 3673953 - 3673892
Alignment:
Q  261 attgactaattttagtttatctactaacataaacacttgt-gagactatttgtgagagctta 321  Q
    ||||||| |||| |||||||| |||||||||||||||||| ||||||||| | |||||||||    
T  3673953 attgacttatttgagtttatcaactaacataaacacttgtggagactattagggagagctta 3673892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 22878249 - 22878176
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||||||||||||| |||| || ||||| ||| |||||| ||||||||||||| |||| |||| |||| |||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatggaaa 22878176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 35329737 - 35329810
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||||||||||||| || | || |||||||||| |||||||||| |||||| || |||||||| |||| |||||    
T  35329737 tgtttggattgacttatgtgagcttatctactaccataaacactagtgagattacttgtgagatcttatggaaa 35329810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 3078526 - 3078594
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||||||| |||| || |||||||| |||| |||||||||| | ||||||||  ||||||||    
T  3078526 ctgtttggattgacttatttgagcttatctaccaacacaaacacttgtcaaactatttggaagagctta 3078594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 13867029 - 13866962
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||||||  |||| || |||||||||  ||||||||||||||||||| |||| |||| ||||    
T  13867029 tgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaactta 13866962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 13869019 - 13869094
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||| |  ||||| | |||||| |||||||||| |||||| ||||| |||||||||||| |||| ||||    
T  13869019 ttagggcctgtattaattgaatcattttaatttatctactgacataagcacttatgagactatttgagagaactta 13869094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 19978098 - 19978031
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||| ||| ||||||||||||||| ||| |||| |||||| |||||| |||| |||| ||||    
T  19978098 tgtttggattcacttattttagtttatctattaaaataagcacttgcgagactgtttgagagaactta 19978031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 33197180 - 33197243
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagag 317  Q
    |||||||||||||| |||| |||||||| ||| ||||  | ||||||||||||||||| |||||    
T  33197180 tgtttggattgacttatttgagtttatcaactgacattgatacttgtgagactatttgagagag 33197243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 2416472 - 2416426
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataa 292  Q
    ||||||| ||||| |||||||| |||| |||||||||||||||||||    
T  2416472 ttagggcatgtttagattgacttatttgagtttatctactaacataa 2416426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 10619132 - 10619170
Alignment:
Q  247 tagggcctgtttggattgactaattttagtttatctact 285  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  10619132 tagggcctgtttggattgactcatttgagtttatctact 10619170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 15120335 - 15120261
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||||||||||||| |||| |  |||||||||| |||||||| ||||||  || |||| ||||||||| |||||    
T  15120335 ctgtttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaa 15120261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 21616581 - 21616631
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    |||||||||||| |||| |||||||| ||| ||||||||| ||||||||||    
T  21616581 tttggattgacttatttcagtttatccactgacataaacatttgtgagact 21616631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 38078336 - 38078406
Alignment:
Q  261 attgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaatagt 331  Q
    ||||||| | || |||||||||||| | |||| |||| |||||||||| || ||||||||| |||||||||    
T  38078336 attgacttaattgagtttatctacttaaataagcactggtgagactatctgagagagcttatggaaatagt 38078406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 3059200 - 3059273
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||| |||||||||| |||| |||| ||||||| ||| |||||||||||||  || ||| |||| |||||||||    
T  3059200 agggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagctta 3059273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 9996895 - 9996822
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||||| |||||| |||| || ||||| |||| |||||  ||||||||||||  ||| |||||||||    
T  9996895 agggcctgtttggcttgacttatttgagcttatcaactagcataagtacttgtgagactgcttgggagagctta 9996822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 15370238 - 15370299
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    |||||||||||||||||| |||| || |||||||||  ||||| || |||||||||| ||||    
T  15370238 ggcctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttg 15370299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 43985358 - 43985297
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagag 317  Q
    ||||||| |||| |||| |||||||||||| |||||||||||||| | ||| |||| |||||    
T  43985358 tttggatcgacttatttaagtttatctactgacataaacacttgtaaaactgtttgagagag 43985297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 6548041 - 6547973
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||||||| |||  || |||||||||| |||||  |||||||||||| |||| | |||||||    
T  6548041 ctgtttggattgacttattcaagcttatctactagcataagaacttgtgagactgtttgagggagctta 6547973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 8017586 - 8017518
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||||||| |||| || ||||||| | |||||| |||||||| || |||||| |||| ||||    
T  8017586 ctgtttggattgacttatttgaggttatctattgacataagcacttgtgcgattatttgggagaactta 8017518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 40759315 - 40759259
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    ||||||||||||||| || |||| || ||||||| | |||||| |||||||||||||    
T  40759315 ggcctgtttggattgccttatttgagcttatctattgacataagcacttgtgagact 40759259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 253 - 330
Target Start/End: Complemental strand, 29287378 - 29287302
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaatag 330  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||| |||||||| | ||||||    
T  29287378 ctgtttggattgactaatttgagtttatctagtaatataaacactcgtgagactatttgt-agagcttatgaaaatag 29287302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 20547305 - 20547376
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||  |||| || ||||||||||||||| | |||||||||||||||| ||| |||| |||||||||    
T  20547305 ggcctgtttatattggcttattttagtttatctaatgacataaacacttgtgatactgtttgagagagctta 20547376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 47041958 - 47042025
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||||||| |||| ||  |||||| | |||| ||||||||||||||| ||||||||||||||    
T  47041958 tgtttggattgacttatttgagcatatctattgacattaacacttgtgagactttttgtgagagctta 47042025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 529519 - 529446
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||| ||| ||||||||||| |||| || |||||||||  |||||||||||||||| ||||||| |||| ||||    
T  529519 agggtctgattggattgacttatttgagcttatctactggcataaacacttgtgaggctatttgggagaactta 529446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 1418580 - 1418503
Alignment:
Q  244 tgttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||| | |||||||||||||| |||| || |||||||||  ||||| ||||| |||| || ||||||||||||||    
T  1418580 tgttaggacttgtttggattgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagctta 1418503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 28691754 - 28691807
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    ||||||||||||||| |||| ||||||||| ||||||||| || ||||||||||    
T  28691754 ctgtttggattgacttatttgagtttatctgctaacataagcatttgtgagact 28691807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 7087062 - 7087110
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtga 302  Q
    ||||||||||||||||||| |||||||||||||  |||| |||||||||    
T  7087062 tgtttggattgactaatttcagtttatctactagtataagcacttgtga 7087110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 24976028 - 24975989
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataa 292  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  24976028 ctgtttggattgactaatttgagcttatctactaacataa 24975989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 35808862 - 35808905
Alignment:
Q  247 tagggcctgtttggattgactaattttagtttatctactaacat 290  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||    
T  35808862 tagggtctgtttggattgactaatttcagtttatctactgacat 35808905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 23215006 - 23214944
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgaga 316  Q
    |||||||||||||| |||| |  |||||||||| ||||||||||| ||||||| |||| ||||    
T  23215006 tgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagaga 23214944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 8427168 - 8427107
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    ||||| |||||||||| | |||| || ||||||||||||||||  |||||||||||| ||||    
T  8427168 ggcctatttggattgatttatttgagcttatctactaacataagtacttgtgagactgtttg 8427107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 29363660 - 29363607
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    |||||||||||| || |||| |  |||||||||||||||| |||||||||||||    
T  29363660 ctgtttggattggcttatttgaacttatctactaacataagcacttgtgagact 29363607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 33894784 - 33894711
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||| ||||||||||  || |||| || ||||| | | |||||| ||||||||||||| ||||||||||||||    
T  33894784 agggcatgtttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagctta 33894711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 39542221 - 39542294
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaata 329  Q
    ||||| |||||| |||| ||||||||||||| ||||| |||||| |||||  |||  ||||||||| |||||||    
T  39542221 tttgggttgacttatttgagtttatctactagcataagcacttgcgagacagttttagagagcttatggaaata 39542294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 40598404 - 40598456
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    |||||||||||||| |||| || |||||||||| ||| |||||||| ||||||    
T  40598404 tgtttggattgacttatttgagcttatctactagcatgaacacttgcgagact 40598456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 44014712 - 44014774
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    |||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||| ||||    
T  44014712 gggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttg 44014774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 51929897 - 51929826
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctt 320  Q
    ||||||||||||||||||| |||| || ||||||| || |||||||||||||||| |||||||  |||||||    
T  51929897 gggcctgtttggattgacttatttgagcttatctattagcataaacacttgtgaggctatttggaagagctt 51929826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 1810102 - 1810055
Alignment:
Q  280 tctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  1810102 tctactaacataatcacttgtgagactatttgagagagcttacggaaa 1810055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 321
Target Start/End: Complemental strand, 50211886 - 50211819
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||| ||| ||||||| |||||||||||||||| ||||||| ||||| |||| |||| ||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaactta 50211819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 37138434 - 37138376
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    |||||||||||| || |||  | |||||||||| |||||||||||||||||||||||||    
T  37138434 ctgtttggattggcttattagaatttatctactgacataaacacttgtgagactatttg 37138376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 32663797 - 32663716
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||||| |||||||||||| || |||| || ||||||||  ||| | ||||||||||||||||||| ||||| ||| |||||    
T  32663797 ttagggtctgtttggattggcttatttgagcttatctaccgacaaatacacttgtgagactatttgagagagtttatggaaa 32663716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 41848641 - 41848702
Alignment:
Q  260 gattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||| |||| ||||||||||||||||||||||||||| ||| | |||||  |||||||    
T  41848641 gattgacttatttgagtttatctactaacataaacacttgtaagattgtttgtacgagctta 41848702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 49465576 - 49465632
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtga 302  Q
    ||||||||| |||||||||||| |||| ||||||| ||||| ||||| |||||||||    
T  49465576 ttagggcctatttggattgacttatttcagtttatttactaccataagcacttgtga 49465632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 52323812 - 52323880
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||| |||||||| | || |||| |||||||||||||| ||||||  ||||| ||||||||||||||    
T  52323812 ctgtttagattgacttaattgagttgatctactaacataagcacttgcaagactgtttgtgagagctta 52323880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 20210847 - 20210914
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||||| | |||| || ||||||||| |||||| ||||||||||||| |||| |||| ||||    
T  20210847 tgtttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgagagatctta 20210914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 49845457 - 49845532
Alignment:
Q  252 cctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||||||||||||||| |||| || |||| |||||  ||||| |||| ||| |||||||| ||||||||| |||||    
T  49845457 cctgtttggattgacttatttgagcttatatactagtataaaaacttatgaaactatttgggagagcttatggaaa 49845532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 11041144 - 11041218
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||| |||||||| | |||| || ||||||||||| |||| |||||||| |||| |||| ||||||||| |||||    
T  11041144 ctgtatggattgagtcatttgagcttatctactaagataagcacttgtgggactgtttgagagagcttatggaaa 11041218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 3775764 - 3775837
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||| ||||||||||| || |||| ||||||||||||  |||||||| |||| ||||| ||||  ||||||||    
T  3775764 agggcgtgtttggattgccttatttgagtttatctactggcataaacaattgttagactgtttggcagagctta 3775837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 22667558 - 22667481
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||| ||| ||||| || |||| || ||||||||| |||||| ||||||||||||| |||| ||||| ||| |||||    
T  22667558 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaa 22667481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 22724197 - 22724120
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||| ||| ||||| || |||| || ||||||||| |||||| ||||||||||||| |||| ||||| ||| |||||    
T  22724197 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaa 22724120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 25459541 - 25459622
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||||| ||||||||||||| | |||| || ||||| |||| ||||| ||||||||||| | ||||  ||||||||| ||||    
T  25459541 ttagggtctgtttggattgatttatttgagcttatcaactagcataagcacttgtgagattgtttggaagagcttagagaaa 25459622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 20192521 - 20192569
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacactt 298  Q
    ||||||||||||||||||||||| | |||||||| | |||||| |||||    
T  20192521 ggcctgtttggattgactaatttcaatttatctattgacataagcactt 20192569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 35708447 - 35708387
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    ||||||||||||| |||||  | |||||||||| |||||| |||||||| ||||| |||||    
T  35708447 ttagggcctgtttagattggtttattttagtttctctactgacataaactcttgtaagact 35708387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 36769874 - 36769914
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctacta 286  Q
    |||||||||||||||||||||| |||| | |||||||||||    
T  36769874 ttagggcctgtttggattgacttatttgattttatctacta 36769914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 39311615 - 39311671
Alignment:
Q  271 tttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||||| | ||||| |||||| |||||||||||||||||  ||||||||| |||||    
T  39311615 tttagttaacctactgacataagcacttgtgagactattttggagagcttatggaaa 39311671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 45590779 - 45590735
Alignment:
Q  277 ttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||| ||||| ||||||||||||| |||| |||||||||    
T  45590779 ttatctactagcataagcacttgtgagactgtttgggagagctta 45590735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 50016042 - 50015970
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||| ||||||||| || || | |||||||||| |  ||||||||||||||||||| |||| |||| ||||    
T  50016042 gggcctctttggattggcttatctcagtttatctattggcataaacacttgtgagactgtttgagagaactta 50015970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 54258740 - 54258688
Alignment:
Q  252 cctgtttggattgactaattttagtttatctactaacataaacacttgtgaga 304  Q
    |||||||||||  ||| |||||||||||| |||| | ||||||||||||||||    
T  54258740 cctgtttggatcaacttattttagtttatttactcatataaacacttgtgaga 54258688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 6659830 - 6659764
Alignment:
Q  255 gtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||| || ||||||    
T  6659830 gtttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagctta 6659764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 32515356 - 32515433
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||||||||||||  |  |||| ||||||||||||||||||| ||||||||||||| |||| ||||||||| |||||    
T  32515356 ggcctgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaa 32515433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 10199321 - 10199389
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgaga 316  Q
    |||||||| ||||||||||| |||| || |||||||||||||||| ||||||||| |||||||| ||||    
T  10199321 agggcctggttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggaga 10199389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 327
Target Start/End: Complemental strand, 26866471 - 26866391
Alignment:
Q  247 tagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||| ||||||||||||||| |||| || ||||||||||||| ||| |||| ||||||||||||  |||||||| |||||    
T  26866471 tagggtctgtttggattgacttatttcagcttatctactaacacaaatacttctgagactatttggaagagcttatggaaa 26866391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 28467584 - 28467509
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaata 329  Q
    |||||||||||||| |||| ||||||| ||||| ||| | ||||| |||||||||||| ||||| ||| |||||||    
T  28467584 tgtttggattgacttatttgagtttatttactagcattagcacttatgagactatttgggagagattatggaaata 28467509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 9602568 - 9602630
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    |||||| |||||||||||| || | || |||||||||||| ||| ||||||||||||||||||    
T  9602568 gggcctatttggattgacttatctgagcttatctactaacttaagcacttgtgagactatttg 9602630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 33723299 - 33723353
Alignment:
Q  252 cctgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    |||||||||||||||| |||| |  |||||||||| |||||||||||||||||||    
T  33723299 cctgtttggattgacttatttgaacttatctactaccataaacacttgtgagact 33723353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 24460312 - 24460377
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    |||||||||||||||||||||| |||| |  ||||||||| |||| | ||||||||||||| ||||    
T  24460312 ttagggcctgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttg 24460377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 29793619 - 29793672
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgtgagactatt 309  Q
    |||| ||||||| |||| || ||||||||| |||||||||||||||||||||||    
T  29793619 tttgtattgacttatttgagcttatctactgacataaacacttgtgagactatt 29793672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 24417655 - 24417711
Alignment:
Q  255 gtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    ||||||||||||| |||| |||||||||| ||| ||||  |||||||||||||||||    
T  24417655 gtttggattgacttatttgagtttatctattaatataagtacttgtgagactatttg 24417711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 38867744 - 38867825
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaata 329  Q
    ||||||||||||||||| |||  |||| ||| |||||| | ||||||||||||||  |||| |||| ||||||||| |||||||    
T  38867744 ttagggcctgtttggatggacgtatttgagtctatctaatgacataaacacttgt--gactgtttgagagagcttatggaaata 38867825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 4200379 - 4200320
Alignment:
Q  260 gattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagct 319  Q
    |||||||| |||||||||||| |||| | |||| || |||||||||| ||||||||||||    
T  4200379 gattgacttattttagtttatatactgatataagcatttgtgagactgtttgtgagagct 4200320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 30257833 - 30257767
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaaca-cttgtgagactatttgtgagagctta 321  Q
    |||||||| ||| |||| |||||||||||| |||||||||  ||||||||||||||  |||||||||    
T  30257833 tttggatttacttatttgagtttatctactgacataaacattttgtgagactatttaggagagctta 30257767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 327
Target Start/End: Original strand, 30457984 - 30458034
Alignment:
Q  277 ttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||||||||||||||||| |||  |||||||||| ||||||||| |||||    
T  30457984 ttatctactaacataaacagttgctagactatttgggagagcttatggaaa 30458034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 5157221 - 5157156
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||||| |||| |  ||||||||  |||||||||||||||| ||| |||| |||||||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagctta 5157156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 2522744 - 2522696
Alignment:
Q  257 ttggattgactaattttagtttatctactaacataaacacttgtgagac 305  Q
    ||||||||||| |||| ||||||||||||  ||||||||||||| ||||    
T  2522744 ttggattgacttatttgagtttatctactggcataaacacttgtaagac 2522696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 15558370 - 15558310
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    |||||||||||||||||||| | |||| || ||||| |||  | |||||||||||||||||    
T  15558370 ttagggcctgtttggattgagttatttgagcttatcgactggcttaaacacttgtgagact 15558310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 29793915 - 29793851
Alignment:
Q  247 tagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    ||||| ||||||| ||||||| |||| | ||||| ||| | ||||| ||||||||||||||||||    
T  29793915 tagggtctgtttgaattgacttatttgaatttatttaccagcataagcacttgtgagactatttg 29793851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 40751033 - 40751108
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttag 322  Q
    |||||| ||||||| ||||||| |||| || ||||  ||| ||||||| ||||||||||| ||||| ||||||||||    
T  40751033 ttagggtctgtttgaattgacttatttgagcttatacacttacataaaaacttgtgagac-atttgggagagcttag 40751108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 42550345 - 42550273
Alignment:
Q  255 gtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||||||||||| | || || |||||||| | |||||||||||||||  || |||| ||||||||| |||||    
T  42550345 gtttggattgacttagttgaggttatctaccagcataaacacttgtgaagctctttgagagagcttatggaaa 42550273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 308
Target Start/End: Original strand, 49282658 - 49282686
Alignment:
Q  280 tctactaacataaacacttgtgagactat 308  Q
    |||||||||||||||||||||||||||||    
T  49282658 tctactaacataaacacttgtgagactat 49282686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 34198573 - 34198500
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaa 326  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||||||| || ||||| | ||||||| ||||    
T  34198573 ctgtttggattgacttatttgagtttatttactaacataaacacttgtgataccatttgagcgagcttacggaa 34198500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 10638453 - 10638521
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||||||| |||| || |||||||| ||||||| ||||||| |||||||||| |||||||||    
T  10638453 ctgtttggattgacttatttaagattatctaccaacataagcacttgtaagactatttgggagagctta 10638521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 31723954 - 31723889
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||||| |||| || |||| ||||| ||||||||||| ||||||||||||| ||||||||    
T  31723954 tttggattgacttatttgagcttatgtactagcataaacacttatgagactatttgtaagagctta 31723889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 40335788 - 40335849
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    |||||||||||||||||| |||| ||||||||||||  || |||||||||||||||| ||||    
T  40335788 ggcctgtttggattgacttatttgagtttatctactcgcacaaacacttgtgagactgtttg 40335849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 42180998 - 42181080
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaatag 330  Q
    |||| |||||||||||||||||||| |  |||| ||||| ||||  || ||||||||| ||||| ||||||||| ||||||||    
T  42180998 aggggctgtttggattgactaatttgaacttatttactagcatatgcatttgtgagacaatttgggagagcttatggaaatag 42181080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 19627553 - 19627625
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaa 326  Q
    ||||||||||| ||||||| |   |||||||||| |||||||||||||| ||| ||||||| |||||| ||||    
T  19627553 tgtttggattggctaatttgaacctatctactaatataaacacttgtgatactgtttgtgaaagcttacggaa 19627625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 26004914 - 26004962
Alignment:
Q  252 cctgtttggattgactaattttagtttatctactaacataaacacttgt 300  Q
    |||||||||||||||| ||||||| |||||||||| ||||| |||||||    
T  26004914 cctgtttggattgacttattttagcttatctactagcataagcacttgt 26004962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 36796626 - 36796678
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagact 306  Q
    |||||||||||||| |||| || ||||||| | ||||||||||||||||||||    
T  36796626 tgtttggattgacttatttgagcttatctaatgacataaacacttgtgagact 36796678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 2092508 - 2092435
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaatag 330  Q
    ||||||| |||| |||| ||||||||||||| |||||| ||||||| |||| |||||||||  ||| ||||||||    
T  2092508 tttggatcgacttatttgagtttatctactagcataaatacttgtgggact-tttgtgagaagttatggaaatag 2092435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 3932580 - 3932633
Alignment:
Q  239 tatagtgttagggcctgtttggattgactaattttagtttatctactaacataa 292  Q
    ||||| ||||||| |||||||||||||||||||| || |||||||  |||||||    
T  3932580 tatagagttagggactgtttggattgactaatttgagcttatctaacaacataa 3932633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 9174973 - 9174912
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatt 309  Q
    ||||| |||||||||||||| |||| || ||||||| || ||||||| || |||||||||||    
T  9174973 agggcatgtttggattgacttatttgagcttatctattagcataaacgctcgtgagactatt 9174912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 28586680 - 28586761
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaatag 330  Q
    |||||||||||||||||||||||| |  |  |||| || ||||| || |||||| ||| |||| ||||||||| ||||||||    
T  28586680 gggcctgtttggattgactaatttgaactagtctaatagcataagcatttgtgaaactgtttgggagagcttatggaaatag 28586761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 29336789 - 29336708
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||| ||||||||||||||| | |||| |||||||||| |  || || |||||||||||||  ||| ||||||||| |||||    
T  29336789 ttagagcctgtttggattgaatcatttgagtttatctattggcaaaagcacttgtgagactgattgagagagcttatggaaa 29336708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 11615575 - 11615619
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgt 300  Q
    ||||||||| || |||| || ||||||||||||||||||||||||    
T  11615575 tttggattggcttatttgagcttatctactaacataaacacttgt 11615619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 14706205 - 14706253
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgtgaga 304  Q
    |||||||||||| |||| || ||| ||||| ||||||||||||||||||    
T  14706205 tttggattgacttatttgagcttacctactgacataaacacttgtgaga 14706253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 32010098 - 32010058
Alignment:
Q  252 cctgtttggattgactaattttagtttatctactaacataa 292  Q
    |||||||||||||||| |||| |||||||||||| ||||||    
T  32010098 cctgtttggattgacttatttgagtttatctactcacataa 32010058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 35135564 - 35135644
Alignment:
Q  247 tagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||| |||||||||||| ||| |||| || || |||||| |||||| ||||||||| |||||| | |||||| || |||||    
T  35135564 taggacctgtttggattaacttatttcagcttctctactgacataaccacttgtgatactattcgggagagcctatggaaa 35135644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 39257314 - 39257386
Alignment:
Q  255 gtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||||| || || |||| || |||||||||||||||| ||||||||||||| | || || ||||||| ||||    
T  39257314 gtttggactggcttatttaagcttatctactaacataagcacttgtgagactgtgtgcgaaagcttagagaaa 39257386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 6962 - 6894
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||| ||| |||| |||| ||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  6962 ctgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagctta 6894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 28615486 - 28615435
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgaga 304  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||||||    
T  28615486 ctgtttggattgacttatttaagtttatctactagcataaacacttgtgaga 28615435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 56186817 - 56186872
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatt 309  Q
    |||||||||| ||| |||  ||||||||||||||||||||||||||||||||||||    
T  56186817 tgtttggattaacttattcgagtttatctactaacataaacacttgtgagactatt 56186872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 7367965 - 7368038
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagct 319  Q
    |||||| ||||||||||||||| |||| |||||||||||   ||||||| ||||||||||| |||| |||||||    
T  7367965 ttagggtctgtttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagct 7368038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 22662165 - 22662213
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacact 297  Q
    ||||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  22662165 gggcctgtttggattgacttatttgagtttatctactaacataagcact 22662213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 22666644 - 22666692
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacact 297  Q
    ||||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  22666644 gggcctgtttggattgacttatttgagtttatctactaacataagcact 22666692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 22772387 - 22772445
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgaga 304  Q
    |||||||||||||||||||||| ||||   ||||||||||| ||||||||||| |||||    
T  22772387 ttagggcctgtttggattgactcatttagttttatctactagcataaacacttttgaga 22772445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 18628478 - 18628539
Alignment:
Q  260 gattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||  |||| || ||||||||| |||||||||||||||||||| |||| |||||||||    
T  18628478 gattgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagctta 18628539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 50746124 - 50746067
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtg 313  Q
    |||| ||||||| |||| ||||||||||||  ||||| ||||||||||||||||||||    
T  50746124 tttgtattgacttatttgagtttatctacttgcataagcacttgtgagactatttgtg 50746067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 17975255 - 17975323
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||||||| |||| || |||||||| |||| |||||||||| | ||||||||  ||||||||    
T  17975255 ctgtttggattgacttatttgagcttatctaccaacacaaacacttgtcaaactatttggaagagctta 17975323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 18512433 - 18512500
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctt 320  Q
    |||||| |||| ||| |||| || ||||||||| ||||||||||||||||||||| |||  |||||||    
T  18512433 ctgtttcgattaacttatttgagcttatctactgacataaacacttgtgagactagttgaaagagctt 18512500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 25571423 - 25571372
Alignment:
Q  241 tagtgttagggcctgtttggattgactaattttagtttatctactaacataa 292  Q
    |||| ||||||||||||||||||| || |||| |||||||||||| ||||||    
T  25571423 tagttttagggcctgtttggattggcttatttgagtttatctactgacataa 25571372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 1017176 - 1017122
Alignment:
Q  257 ttggattgactaattttagtttatctactaacataaacacttgtgagactatttg 311  Q
    ||||||||||| |||| || | ||||||| |||||||||||||||||||| ||||    
T  1017176 ttggattgacttatttgagctaatctactgacataaacacttgtgagactgtttg 1017122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 25896933 - 25896859
Alignment:
Q  256 tttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaatag 330  Q
    |||||||| ||| |||| ||||||||||||| ||| | ||||||||||||| |||  |||||||||  |||||||    
T  25896933 tttggattcacttatttgagtttatctactagcattagcacttgtgagactgtttaggagagcttatagaaatag 25896859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 32769538 - 32769500
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctac 284  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  32769538 ttagggcctgtttggattgacttattttagcttatctac 32769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 9316676 - 9316603
Alignment:
Q  254 tgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||||||||||||| |||| || | ||| | | |||||||||||||||| ||| |||| ||||||||| |||||    
T  9316676 tgtttggattgacttatttgagctcatccatttacataaacacttgtgaaactgtttgggagagcttatggaaa 9316603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 11264453 - 11264388
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagc 318  Q
    |||||||||||| || |||| ||| ||||||||| ||||||||  ||||||||| |||| ||||||    
T  11264453 ctgtttggattggcttatttgagtctatctactagcataaacatctgtgagactgtttgggagagc 11264388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 18020116 - 18020043
Alignment:
Q  248 agggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    |||| |||||||||| |||| |||| ||||||| ||| |||||||||||||  || ||| |||| |||||||||    
T  18020116 agggtctgtttggatcgacttatttgagtttatttacgaacataaacacttaagaaactgtttgggagagctta 18020043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 32741182 - 32741263
Alignment:
Q  246 ttagggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    |||||||||||| ||||||||| |||| |   |||||||||||||||  |||||  ||| |||||| ||||||||| |||||    
T  32741182 ttagggcctgttcggattgacttatttaaagctatctactaacataagtacttgcaagaatatttgggagagcttatggaaa 32741263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 9720572 - 9720616
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacact 297  Q
    ||||| ||||||||| |||| ||||||||||||||||||| ||||    
T  9720572 ctgttgggattgacttatttgagtttatctactaacataagcact 9720616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 10365923 - 10365859
Alignment:
Q  257 ttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagctta 321  Q
    ||||||||||| |||| |  ||||||||| ||||||||||| | ||||||||||| || ||||||    
T  10365923 ttggattgacttatttaatcttatctactgacataaacactggagagactatttgagacagctta 10365859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 11877935 - 11877899
Alignment:
Q  285 taacataaacacttgtgagactatttgtgagagctta 321  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  11877935 taacataaacacttgtgagactgtttgtgagaactta 11877899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 27123268 - 27123344
Alignment:
Q  251 gcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||||||||||| ||| |||| || ||||  |||| |||||  |||||||||||| |||| ||||||||| |||||    
T  27123268 gcctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaa 27123344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 32072015 - 32071963
Alignment:
Q  253 ctgtttggattgactaattttagtttatctactaacataaacacttgtgagac 305  Q
    ||||||||| ||||| |||| |||||||||| | |||||| ||||||||||||    
T  32072015 ctgtttggactgacttatttgagtttatctattgacataagcacttgtgagac 32071963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 9693 - 9770
Alignment:
Q  250 ggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactatttgtgagagcttagggaaa 327  Q
    ||||| ||| |||||| | |||| |||||||||||||||||||| |||||||||||| |||| |||||| || |||||    
T  9693 ggcctatttagattgatttatttgagtttatctactaacataaatacttgtgagactgtttgggagagcctatggaaa 9770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 159887 - 159948
Alignment:
Q  249 gggcctgtttggattgactaattttagtttatctactaacataaacacttgtgagactattt 310  Q
    |||||||||||||||| || |||| || ||||||||||| |||||||||||||| |||||||    
T  159887 gggcctgtttggattggcttatttgagcttatctactaatataaacacttgtgaaactattt 159948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University