View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_33 (Length: 330)
Name: NF8581_low_33
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 526336 - 526655
Alignment:
| Q |
1 |
tcacttcgaattttatctagtcggtcatccaacccatcaagaaaaacatacactcgaccttcttgtatgattgagttgtatttttgtatatcaatttgac |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| |
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| T |
526336 |
tcacttcgaaatttatctagtcggtcatccaacccatcaagaaaaacatacactcgatcttcttgtatgattgaattatatttttgtatatcaatttgac |
526435 |
T |
|
| Q |
101 |
acaccattgggttaggacgacgaaaatcaatttctctccacaacttttgaagatcattgtaatatttttctatggatcctccattctgttttactttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
526436 |
acaccattgggttaggacgacgaaaatcaatttctctccacaacctttgaagatcattgtaatatttttctatggatcctccattctgttttactttggt |
526535 |
T |
|
| Q |
201 |
cacctgtctttttagatcataaacttgagatgtgtcagaaccatcaaaataagttgtagatatagaatcccataccatttttgcagttggaaatcgaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
526536 |
cacctgtctttttagatcataaacttgagatgtgtcagaaccatcaaaataagttgtagatatagaatcccataccatttttgcagttggaaatcgaatg |
526635 |
T |
|
| Q |
301 |
aaattggcaatcggtgatgt |
320 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
526636 |
aaattggcaatcagtgatgt |
526655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 22852512 - 22852201
Alignment:
| Q |
1 |
tcacttcgaattttatctagtcggtcatccaacccatcaagaaaaacatacactcgaccttcttgtatgattgagttgtatttttgtatatcaatttgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
22852512 |
tcacttcgaattttatctagtcggtcatccaacccatcaagaaaaacatacactcgatcttcttgtatgattgatttatatttttgtatatcaatttgac |
22852413 |
T |
|
| Q |
101 |
acaccattgggttaggacgacgaaaatcaatttctctccacaacttttgaagatcattgtaatatttttctatggatcctccattctgttttactttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
22852412 |
acaccattgggttaggacgacgaaaatcaatttctctccagaacctttgaagatcattgcaatatttttctatggatcttccattctgttttattttggt |
22852313 |
T |
|
| Q |
201 |
cacctgtctttttagatcataaacttgagatgtgtcagaaccatcaaaataagttgtagatatagaatcccataccatttttgcagttggaaatcgaatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22852312 |
cacctgtctttttagatcataaacttgagatgtgtcagaaccatcaaaataagttgtagatatagaatcccataccatttttgcagttggaaatcaaatg |
22852213 |
T |
|
| Q |
301 |
aaattggcaatc |
312 |
Q |
| |
|
||||||| |||| |
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|
| T |
22852212 |
aaattggaaatc |
22852201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 10664859 - 10664805
Alignment:
| Q |
115 |
ggacgacgaaaatcaatttctctccacaacttttgaagatcattgtaatattttt |
169 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||||| ||||| ||||||| |
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|
| T |
10664859 |
ggacgacgaaaatcaatttctcgccacaatccttgaagatcgttgtagtattttt |
10664805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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