View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_35 (Length: 315)

Name: NF8581_low_35
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_35
NF8581_low_35
[»] chr1 (3 HSPs)
chr1 (1-302)||(10555199-10555500)
chr1 (38-167)||(29201108-29201237)
chr1 (39-138)||(23297813-23297912)
[»] chr2 (2 HSPs)
chr2 (39-167)||(17072206-17072330)
chr2 (56-115)||(19315330-19315387)
[»] chr4 (4 HSPs)
chr4 (38-141)||(42845296-42845398)
chr4 (39-133)||(48546137-48546230)
chr4 (69-115)||(49863058-49863103)
chr4 (189-249)||(12105289-12105347)
[»] chr3 (4 HSPs)
chr3 (38-124)||(14857883-14857966)
chr3 (104-167)||(35575240-35575304)
chr3 (40-141)||(45972403-45972504)
chr3 (262-302)||(53281429-53281469)
[»] chr5 (1 HSPs)
chr5 (38-167)||(11777411-11777535)
[»] chr7 (2 HSPs)
chr7 (40-148)||(21774052-21774156)
chr7 (35-88)||(44570123-44570175)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 10555500 - 10555199
Alignment:
Q  1 tagcaacctgtgatacaacaaaagcaagatcatcaacaaggaaaatgattcatacacaccctttttcccataccactcttgtacacacccttatatgaca 100  Q
    |||||||||| ||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |    
T  10555500 tagcaacctgcgatacaacaaaagcacgatcatcaagaaggtaaatgattcatagacaccctttttcccataccgctcttgtacacacccttatatgata 10555401  T
Q  101 gggtattttggtaatttcgcaaacccttcttttcaatcctttcactctttccaatccttctctgcaaaacacaccctaacactttaatagatctctctca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  10555400 gggtattttggtaatttcgcaaacccttcttttcaatcctttcactctttccaatcctcctctgcaaaacacaccctaacactttaacagatctctctca 10555301  T
Q  201 ctcctctctatctcatcaccacatcatccacactcctttaccaccaccaatgtcgccgcctccgcctcatccttgtccttcgccccacccctccctttga 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  10555300 cttctctctatctcatcaccacatcatccacactcctttaccaccaccaatgtcgccgcctccgcctcatccttgccgttcgccccacccctccctttga 10555201  T
Q  301 tg 302  Q
    ||    
T  10555200 tg 10555199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 29201237 - 29201108
Alignment:
Q  38 aaggaaaatgattcatacacaccctttttcccataccactcttgtacacacccttatatgacagggtatttt-ggtaatttcgcaaacccttcttttcaa 136  Q
    ||||||||||||||||| ||||||||||||| ||||||||  | || ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  29201237 aaggaaaatgattcataaacaccctttttcc-ataccacttctctatacacccttatatggcagggtatttttggtaatttcgcaaaccctttttttcaa 29201139  T
Q  137 tcctttcactctttccaatccttctctgcaa 167  Q
    |||| ||||||| |||| |||| ||||||||    
T  29201138 tcctgtcactctctccattcctcctctgcaa 29201108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 23297912 - 23297813
Alignment:
Q  39 aggaaaatgattcatacacaccctttttcccataccactcttgtacacacccttatatgacagggta-ttttggtaatttcgcaaacccttcttttcaat 137  Q
    |||||||||||||||| |||||||||||  |||||||||  | || |||||||||||||| |||||| |||||||||||| ||||| |||| ||||||||    
T  23297912 aggaaaatgattcataaacacccttttt-tcataccacttctctatacacccttatatgagagggtatttttggtaattttgcaaatcctttttttcaat 23297814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 17072206 - 17072330
Alignment:
Q  39 aggaaaatgattcatacacaccctttttcccataccactcttgtacacacccttatatgacagggtattttggtaatttcgcaaacccttcttttcaatc 138  Q
    |||||||||||||||| ||| |||||  ||||||||||||||||| || |||  ||||| |||||||| ||||||||||||||||||| | |||||||||    
T  17072206 aggaaaatgattcatagacatccttt--cccataccactcttgtatacccccc-atatggcagggtatattggtaatttcgcaaaccc-tattttcaatc 17072301  T
Q  139 ctttcactctttccaatccttctctgcaa 167  Q
    ||||||| || |||||||||  |||||||    
T  17072302 ctttcaccctctccaatcctcatctgcaa 17072330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 19315330 - 19315387
Alignment:
Q  56 acaccctttttcccataccactcttgtacacacccttatatgacagggtattttggtaat 115  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| ||||||||||||||||    
T  19315330 acaccctttttcc-ataccactcttgtataca-ccttatgtgagagggtattttggtaat 19315387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 42845296 - 42845398
Alignment:
Q  38 aaggaaaatgattcatacacaccctttttcccataccactcttgtacacacccttatatgacagggtattttggtaatttcgcaaacccttcttttcaat 137  Q
    ||||||||||||||||| |||||||||| ||||||||||| || || | |||| ||| |  || ||||||||||||||||||||||| ||| ||||||||    
T  42845296 aaggaaaatgattcataaacaccctttt-cccataccacttttctatatacccctatctagcaaggtattttggtaatttcgcaaacactttttttcaat 42845394  T
Q  138 cctt 141  Q
    ||||    
T  42845395 cctt 42845398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 48546230 - 48546137
Alignment:
Q  39 aggaaaatgattcatacacaccctttttcccataccactcttgtacacacccttatatgacagggtattttggtaatttcgcaaacccttctttt 133  Q
    |||||||||||||||| ||||| ||||| | ||| |||| || || |||||| ||| || ||||||||||||||||||| |||||| ||||||||    
T  48546230 aggaaaatgattcataaacaccgttttttc-atatcacttttctatacacccctatctggcagggtattttggtaatttagcaaacacttctttt 48546137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 49863058 - 49863103
Alignment:
Q  69 cataccactcttgtacacacccttatatgacagggtattttggtaat 115  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||||    
T  49863058 cataccattcttgtacacaccct-atatgagagggtattttggtaat 49863103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 12105347 - 12105289
Alignment:
Q  189 agatctctctcactcctctctatctcatcaccacatcatccacactcctttaccaccacca 249  Q
    |||| |||||||||  ||||||||||| ||||||| | |||||||||||| ||||||||||    
T  12105347 agatttctctcact--tctctatctcaccaccacaacctccacactccttaaccaccacca 12105289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 14857966 - 14857883
Alignment:
Q  38 aaggaaaatgattcatacacaccctttttcccataccactcttgtacacacccttatatgacagggtattttggtaatttcgcaaac 124  Q
    ||||||||||||||||| ||| ||||| ||  |||||||||||||| || |||  |||||||||||||| |||||||||||||||||    
T  14857966 aaggaaaatgattcatagacatcctttctc--ataccactcttgtatacccccc-atatgacagggtatattggtaatttcgcaaac 14857883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 35575240 - 35575304
Alignment:
Q  104 tattttggtaatttcgcaaa-cccttcttttcaatcctttcactctttccaatccttctctgcaa 167  Q
    |||||| |||||||| |||| ||||| ||||||||||||||||||| ||||||||| ||||||||    
T  35575240 tattttagtaatttcacaaatccctttttttcaatcctttcactctctccaatcctcctctgcaa 35575304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 45972504 - 45972403
Alignment:
Q  40 ggaaaatgattcatacacaccctttttcccataccactcttgtacacacccttatatgacagggtattttggtaatttcgcaaac-ccttcttttcaatc 138  Q
    ||||||||||||||| ||| |||||| | ||||||||| || || |||||| ||| || |||||||||||| ||||||  ||||| | || |||||||||    
T  45972504 ggaaaatgattcataaacatcctttt-cacataccacttttctatacacccctatctggcagggtattttgataattttacaaacacttttttttcaatc 45972406  T
Q  139 ctt 141  Q
    |||    
T  45972405 ctt 45972403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 53281469 - 53281429
Alignment:
Q  262 ccgcctcatccttgtccttcgccccacccctccctttgatg 302  Q
    ||||| |||||||| ||||||||||||| ||||||||||||    
T  53281469 ccgccgcatccttgcccttcgccccacctctccctttgatg 53281429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 11777411 - 11777535
Alignment:
Q  38 aaggaaaatgattcatacacaccctttttcccataccactcttgtacacacccttatatgacagggtattttggtaatttcgcaaacccttcttttcaat 137  Q
    ||||||||||||||||| |||||| || || ||||||||| ||||||||||||   ||   ||||| |||||||| ||||| ||||||||| | |||||     
T  11777411 aaggaaaatgattcatagacaccc-ttgtctcataccacttttgtacacaccccatta--gcagggcattttggtcatttcacaaaccctt-tcttcaac 11777506  T
Q  138 cctttcactctttccaatccttctctgcaa 167  Q
    ||||||||||| |||||||| |||||||||    
T  11777507 cctttcactctctccaatcc-tctctgcaa 11777535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 21774052 - 21774156
Alignment:
Q  40 ggaaaatgattcatacacaccctttttcccataccactcttgtacacacccttatatgacagggtattttggtaatttcgcaaacccttcttttcaatcc 139  Q
    ||||||||||||||| |||||||| | ||||||||||| ||||||||||||  ||  || |||| ||||||||| |||| ||||||||| | ||||||||    
T  21774052 ggaaaatgattcataaacacccttgt-cccataccacttttgtacacaccc-cattaga-agggcattttggtattttcacaaaccctt-tcttcaatcc 21774147  T
Q  140 tttcactct 148  Q
    |||||||||    
T  21774148 tttcactct 21774156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 44570175 - 44570123
Alignment:
Q  35 aacaaggaaaatgattcatacacaccctttttcccataccactcttgtacacac 88  Q
    |||||||||||||||||||| |||||| |||  |||||||||| ||||||||||    
T  44570175 aacaaggaaaatgattcataaacaccc-tttagccataccacttttgtacacac 44570123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University