View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_36 (Length: 315)
Name: NF8581_low_36
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 28674627 - 28674331
Alignment:
| Q |
1 |
tattgtcaatatataacagcaagaacgaactaaagatgtgtgacaaattgtcattattctttagtgtattggtgttaatatccttatttccttttttagt |
100 |
Q |
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| T |
28674627 |
tattgtcaatatataacagcaagaactaactaaagaagtgtgacaaattgtcattattctttagtgtattggtgttaatatccttatttccttttttagt |
28674528 |
T |
|
| Q |
101 |
tccttgttttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagtt |
200 |
Q |
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| T |
28674527 |
tccttgttttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagtt |
28674428 |
T |
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| Q |
201 |
attatcagaagctccaggtcttaatcactttcaccttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatgccct |
297 |
Q |
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| T |
28674427 |
attatcagaagctctaggtcttaatcgctttcaccttaaagaaatgggtggtgctgaaaagttttttctcttgtgtcactattacccaccatgccct |
28674331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 109 - 259
Target Start/End: Complemental strand, 28649056 - 28648906
Alignment:
| Q |
109 |
ttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcag |
208 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||| ||| ||||| | |||||||| ||||||||| |||| |
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| T |
28649056 |
ttgatgacttgctaatgataacaaacttgcagtgatattgtgaatgaatacacaaaagaagtaacggcacttggatcttctttgtatgagttattgtcag |
28648957 |
T |
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| Q |
209 |
aagctccaggtcttaatcactttcaccttaaagaaatgggtggtgctgaaa |
259 |
Q |
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| T |
28648956 |
agtctcttggccttaatcgctttcaccttaaagaaatgggtgctgctgaaa |
28648906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 109 - 297
Target Start/End: Complemental strand, 28639749 - 28639561
Alignment:
| Q |
109 |
ttgatgacttgctaatgataacaaacctgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcag |
208 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||| ||| ||||| | |||||||| ||||||||| |||| |
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| T |
28639749 |
ttgatgacttgctaatgataacaaacttgcagtgatattgtgaatgaatacacaaaagaagtaacggcacttggatcttctttgtatgagttattgtcag |
28639650 |
T |
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| Q |
209 |
aagctccaggtcttaatcactttcaccttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatgccct |
297 |
Q |
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| | | || ||||||| ||||||||||||||||||||||| |||||||| || || | | | ||||| ||||| |||||||||||| |
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| T |
28639649 |
agtcacttggccttaatcgctttcaccttaaagaaatgggtgctgctgaaagttttttccatctatgtcattattatccaccatgccct |
28639561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 28670588 - 28670465
Alignment:
| Q |
136 |
tgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcagaagctccaggtcttaatcactttcacc |
235 |
Q |
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|||||||||||||| | ||| ||| |||||||||||| ||| ||||| | |||||||| |||||||| ||||| |||| |||||||| | || ||||| |
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| T |
28670588 |
tgcagtgatattgttaatgaatacacaaaagaagtaatggcacttggatcttctttgtacgagttattgtcagaggctctcggtcttaaccgctctcacc |
28670489 |
T |
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| Q |
236 |
ttaaagaaatgggtggtgctgaaa |
259 |
Q |
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||||||||||||| | |||||||| |
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| T |
28670488 |
ttaaagaaatgggcgctgctgaaa |
28670465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 293
Target Start/End: Complemental strand, 28690846 - 28690689
Alignment:
| Q |
136 |
tgcagtgatattgtgagtgagtactcaaaagaagtaaaggctcttggttattctttgtttgagttattatcagaagctccaggtcttaatcactttcacc |
235 |
Q |
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||||| |||||||||| ||| |||||| || |||||| || ||| || | | ||| |||||||||| |||||||||| ||| || || ||||||| |
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| T |
28690846 |
tgcagagatattgtgattgaatactcagaaaaagtaatggtgtttgcttctacattgcttgagttattgtcagaagctctagggctaaacagatttcacc |
28690747 |
T |
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| Q |
236 |
ttaaagaaatgggtggtgctgaaaagttatttcttgtgtgtcactattacccaccatg |
293 |
Q |
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||||||||||||| |||||||| ||| || || | |||||||||||||| ||||| |
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| T |
28690746 |
ttaaagaaatggggtgtgctgaagggttgattgttctatgtcactattaccctccatg |
28690689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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