View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_37 (Length: 312)

Name: NF8581_low_37
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_37
NF8581_low_37
[»] chr6 (6 HSPs)
chr6 (11-296)||(33468385-33468670)
chr6 (15-65)||(13851738-13851788)
chr6 (11-65)||(19040354-19040408)
chr6 (15-65)||(30866151-30866201)
chr6 (15-56)||(26314641-26314682)
chr6 (16-56)||(15443706-15443746)
[»] chr5 (8 HSPs)
chr5 (14-58)||(35904654-35904698)
chr5 (23-61)||(8420033-8420071)
chr5 (15-65)||(30502395-30502445)
chr5 (15-65)||(30542738-30542788)
chr5 (11-65)||(43208277-43208331)
chr5 (15-60)||(30136681-30136726)
chr5 (20-65)||(38749575-38749620)
chr5 (16-64)||(17593730-17593778)
[»] chr7 (2 HSPs)
chr7 (21-61)||(13427322-13427362)
chr7 (15-65)||(42720897-42720947)
[»] chr3 (3 HSPs)
chr3 (15-55)||(39002044-39002084)
chr3 (15-65)||(7928452-7928502)
chr3 (15-59)||(27097066-27097110)
[»] chr8 (2 HSPs)
chr8 (20-65)||(4611536-4611581)
chr8 (9-65)||(20785466-20785522)
[»] chr2 (1 HSPs)
chr2 (20-65)||(28677911-28677956)
[»] chr1 (2 HSPs)
chr1 (20-65)||(6427352-6427397)
chr1 (21-65)||(398778-398822)
[»] chr4 (1 HSPs)
chr4 (13-65)||(3712514-3712566)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 33468385 - 33468670
Alignment:
Q  11 cacagacatatataattacattgaattaagttattttttcaaattactagcggtggtcacgtcagtgtccgtgcccgattgcttcatggtttagttgaga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||||||||||| ||||||||||||    
T  33468385 cacagacatatataattacattgaattaagttattttttcaaattattagcggtgtgcgcgtcagtgtccgtgcccgattgcttcatagtttagttgaga 33468484  T
Q  111 acaggcaaaagagtttgaccacgacatnnnnnnnngcagacagacgcgtatgcaaggataatgtatataatatnnnnnnnnnnntgtcaacatatgtgaa 210  Q
    |||||||||||||||||||||||||||        |||||||||||| |||||||||||| ||||||||||||           |||||| |||||||||    
T  33468485 acaggcaaaagagtttgaccacgacataaaaaaaagcagacagacgcatatgcaaggatagtgtatataatataaaaaaaaaaatgtcaatatatgtgaa 33468584  T
Q  211 gtgcatgaatcataaaaacaactactaaccagtcctatgacctccttgttgttcatcatcattgattggaattggaagtgtgatac 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33468585 gtgcatgaatcataaaaacaactactaaccagtcctatgacctccttgttgttcatcatcattgattggaattgaaagtgtgatac 33468670  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 13851788 - 13851738
Alignment:
Q  15 gacatatataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||| ||||||||||| ||||||| |||||||| |||||||| ||||||||    
T  13851788 gacacatataattacactgaattacgttattttctcaaattattagcggtg 13851738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 19040408 - 19040354
Alignment:
Q  11 cacagacatatataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||||||| ||||||||||| ||||||| || ||||| |||||||| ||||||||    
T  19040408 cacagacacatataattacactgaattatgtgattttctcaaattattagcggtg 19040354  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 30866151 - 30866201
Alignment:
Q  15 gacatatataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||| ||||||||||||||||||| || ||||| |||||||| ||||||||    
T  30866151 gacacatataattacattgaattatgtgattttctcaaattattagcggtg 30866201  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 26314641 - 26314682
Alignment:
Q  15 gacatatataattacattgaattaagttattttttcaaatta 56  Q
    ||||||||||||||||||||||||  | ||||||||||||||    
T  26314641 gacatatataattacattgaattatatgattttttcaaatta 26314682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 15443746 - 15443706
Alignment:
Q  16 acatatataattacattgaattaagttattttttcaaatta 56  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  15443746 acatatataattatattgaattatgttattttctcaaatta 15443706  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 35904698 - 35904654
Alignment:
Q  14 agacatatataattacattgaattaagttattttttcaaattact 58  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  35904698 agacacatataattacactgaattaagttattttttcaaattact 35904654  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 8420071 - 8420033
Alignment:
Q  23 taattacattgaattaagttattttttcaaattactagc 61  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  8420071 taattacattgaattatgttattttttcaaattattagc 8420033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 30502395 - 30502445
Alignment:
Q  15 gacatatataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||| ||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  30502395 gacacatataattacactgaattaagtgattttctcaaattattagcggtg 30502445  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 30542738 - 30542788
Alignment:
Q  15 gacatatataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||| ||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  30542738 gacacatataattacactgaattaagtgattttctcaaattattagcggtg 30542788  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 43208277 - 43208331
Alignment:
Q  11 cacagacatatataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||||||| |||| |||||||||||||| || ||||| ||||||||||| |||||    
T  43208277 cacagacagatatgattacattgaattatgtcattttctcaaattactatcggtg 43208331  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 30136681 - 30136726
Alignment:
Q  15 gacatatataattacattgaattaagttattttttcaaattactag 60  Q
    ||||| |||||||||||||||||| || ||||||| ||||||||||    
T  30136681 gacatttataattacattgaattacgtaattttttaaaattactag 30136726  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 38749575 - 38749620
Alignment:
Q  20 atataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    ||||||||||||||||||| || |||||||||||||| || |||||    
T  38749575 atataattacattgaattatgtcattttttcaaattattatcggtg 38749620  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 17593730 - 17593778
Alignment:
Q  16 acatatataattacattgaattaagttattttttcaaattactagcggt 64  Q
    ||||||||||||||| ||||||| || ||||| |||||||| |||||||    
T  17593730 acatatataattacactgaattacgtgattttctcaaattattagcggt 17593778  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 13427362 - 13427322
Alignment:
Q  21 tataattacattgaattaagttattttttcaaattactagc 61  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  13427362 tataattatattgaattaagtgattttttcaaattactagc 13427322  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 42720897 - 42720947
Alignment:
Q  15 gacatatataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||| ||||||||||||| ||||| || |||||||||||||| ||||||||    
T  42720897 gacacatataattacatttaattatgtgattttttcaaattattagcggtg 42720947  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 39002084 - 39002044
Alignment:
Q  15 gacatatataattacattgaattaagttattttttcaaatt 55  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  39002084 gacatatataattacattgaattatgtgattttttcaaatt 39002044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 7928502 - 7928452
Alignment:
Q  15 gacatatataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||| ||||||||||| ||||||| || |||||||||||||| ||||||||    
T  7928502 gacacatataattacactgaattatgtgattttttcaaattattagcggtg 7928452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 27097066 - 27097110
Alignment:
Q  15 gacatatataattacattgaattaagttattttttcaaattacta 59  Q
    |||||||||||||| ||||||||| || ||||| |||||||||||    
T  27097066 gacatatataattaaattgaattatgtaattttctcaaattacta 27097110  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 4611581 - 4611536
Alignment:
Q  20 atataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    ||||||||||| ||||||| |||||||| |||||||| ||||||||    
T  4611581 atataattacactgaattatgttattttctcaaattattagcggtg 4611536  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 20785466 - 20785522
Alignment:
Q  9 agcacagacatatataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||||||||| ||||||||||||| ||||| || ||||  |||||||| ||||||||    
T  20785466 agcacagacacatataattacattaaattatgtgatttcctcaaattattagcggtg 20785522  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 28677956 - 28677911
Alignment:
Q  20 atataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    ||||||||||| ||||||| || |||||||||||||| ||||||||    
T  28677956 atataattacactgaattatgtgattttttcaaattattagcggtg 28677911  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 6427397 - 6427352
Alignment:
Q  20 atataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    ||||||||||||||||||| || ||||| |||||||| ||||||||    
T  6427397 atataattacattgaattatgtgattttctcaaattattagcggtg 6427352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 398778 - 398822
Alignment:
Q  21 tataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||||||||| ||||||| || |||||||||||||| ||||||||    
T  398778 tataattacactgaattatgtgattttttcaaattattagcggtg 398822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 3712514 - 3712566
Alignment:
Q  13 cagacatatataattacattgaattaagttattttttcaaattactagcggtg 65  Q
    |||||| |||||||||||||||||||  | ||||| |||||||| ||||||||    
T  3712514 cagacacatataattacattgaattacatgattttctcaaattattagcggtg 3712566  T

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