View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_38 (Length: 312)

Name: NF8581_low_38
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_38
NF8581_low_38
[»] chr3 (1 HSPs)
chr3 (3-295)||(15513734-15514026)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 3 - 295
Target Start/End: Original strand, 15513734 - 15514026
Alignment:
Q  3 tcgaccaaactttcttccttcctctacatatatcacctctctacacaactttttcataatcagcaaataatctaagtgaaattactacgtatattctctc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  15513734 tcgaccaaactttcttccttcctctacatatatcacctctctacacaactttttaataatcagcaaataatccaagtgaaattactacgtatattctctc 15513833  T
Q  103 tatctcaagcaagctccatggccaataattaccccattgatcagatcaacgccttatataagatggggaagataaactccctctttggattggcaacatg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513834 tatctcaagcaagctccatggccaataattaccccattgatcagatcaacgccttatataagatggggaagataaactccctctttggattggcaacatg 15513933  T
Q  203 tcttttattgataccaatctcagttttttcatcatcagaatcaaattgtcttcccaaatcaaacattttcatgttcacaggttggtcatgctg 295  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513934 tcttttcttgatgcaaatctcagttttttcatcatcagaatcaaattgtcttcccaaatcaaacattttcatgttcacaggttggtcatgctg 15514026  T

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