View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_4 (Length: 651)

Name: NF8581_low_4
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_4
NF8581_low_4
[»] chr6 (22 HSPs)
chr6 (1-646)||(4325381-4326026)
chr6 (513-615)||(4331433-4331535)
chr6 (312-481)||(4331261-4331433)
chr6 (23-74)||(8420292-8420343)
chr6 (23-74)||(2514626-2514677)
chr6 (25-78)||(4247731-4247784)
chr6 (1-74)||(5328898-5328971)
chr6 (1-73)||(10452433-10452505)
chr6 (25-69)||(32843412-32843456)
chr6 (23-78)||(30523581-30523635)
chr6 (23-74)||(33068656-33068707)
chr6 (1-75)||(27889917-27889990)
chr6 (1-75)||(31420881-31420955)
chr6 (24-74)||(31668781-31668831)
chr6 (1-74)||(3217263-3217336)
chr6 (24-73)||(5554861-5554910)
chr6 (37-78)||(6647309-6647350)
chr6 (24-69)||(6654544-6654589)
chr6 (37-78)||(8010277-8010318)
chr6 (23-76)||(31670970-31671023)
chr6 (37-74)||(32578059-32578096)
chr6 (23-67)||(4006645-4006689)
[»] chr7 (12 HSPs)
chr7 (1-78)||(991990-992067)
chr7 (1-74)||(27121659-27121732)
chr7 (4-74)||(6552346-6552416)
chr7 (1-77)||(33894544-33894619)
chr7 (4-75)||(7244625-7244696)
chr7 (23-74)||(26935645-26935696)
chr7 (28-75)||(33646059-33646106)
chr7 (1-76)||(45593792-45593867)
chr7 (3-77)||(47004008-47004082)
chr7 (17-78)||(8445206-8445267)
chr7 (23-72)||(24973870-24973919)
chr7 (25-77)||(27481391-27481443)
[»] scaffold0590 (1 HSPs)
scaffold0590 (1-73)||(1147-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (1-73)||(2756-2828)
[»] scaffold0100 (1 HSPs)
scaffold0100 (20-75)||(42540-42595)
[»] chr5 (11 HSPs)
chr5 (1-70)||(35135735-35135804)
chr5 (20-77)||(40097495-40097552)
chr5 (26-74)||(40499773-40499821)
chr5 (23-74)||(20982230-20982281)
chr5 (1-71)||(37063147-37063217)
chr5 (4-72)||(7096203-7096271)
chr5 (23-74)||(13224353-13224404)
chr5 (23-74)||(26516222-26516273)
chr5 (24-79)||(37690733-37690787)
chr5 (26-72)||(18704133-18704179)
chr5 (23-67)||(40048375-40048419)
[»] chr3 (21 HSPs)
chr3 (23-76)||(16790183-16790236)
chr3 (1-76)||(27792794-27792869)
chr3 (1-74)||(22232750-22232823)
chr3 (30-71)||(24158604-24158645)
chr3 (1-74)||(54775052-54775125)
chr3 (1-52)||(20143871-20143921)
chr3 (1-52)||(23269268-23269318)
chr3 (23-74)||(39971243-39971294)
chr3 (23-74)||(41028946-41028997)
chr3 (33-79)||(14548819-14548865)
chr3 (23-69)||(20173983-20174029)
chr3 (26-76)||(28283675-28283725)
chr3 (22-67)||(2304335-2304380)
chr3 (25-74)||(20504136-20504185)
chr3 (24-77)||(43116524-43116577)
chr3 (1-65)||(1395604-1395668)
chr3 (23-75)||(16790451-16790503)
chr3 (26-78)||(25185913-25185965)
chr3 (23-75)||(32703061-32703113)
chr3 (2-74)||(38462205-38462277)
chr3 (1-65)||(53736186-53736250)
[»] chr2 (18 HSPs)
chr2 (1-74)||(17952774-17952847)
chr2 (23-74)||(10150679-10150730)
chr2 (1-74)||(28803579-28803652)
chr2 (23-78)||(3673727-3673782)
chr2 (23-74)||(4550701-4550752)
chr2 (24-67)||(10143103-10143146)
chr2 (1-76)||(14209199-14209274)
chr2 (23-74)||(27288557-27288608)
chr2 (37-75)||(18884804-18884842)
chr2 (37-74)||(2400080-2400117)
chr2 (1-78)||(18962111-18962188)
chr2 (1-77)||(3102614-3102690)
chr2 (1-57)||(3458598-3458654)
chr2 (38-78)||(11393476-11393516)
chr2 (38-78)||(11410137-11410177)
chr2 (23-67)||(25609727-25609771)
chr2 (42-74)||(35809857-35809889)
chr2 (33-69)||(44267074-44267110)
[»] chr1 (16 HSPs)
chr1 (1-66)||(45804209-45804274)
chr1 (26-76)||(4202227-4202277)
chr1 (1-59)||(49692123-49692181)
chr1 (4-77)||(45234118-45234191)
chr1 (1-73)||(45107548-45107619)
chr1 (23-74)||(16980750-16980801)
chr1 (1-60)||(29007789-29007848)
chr1 (23-74)||(49557065-49557116)
chr1 (1-75)||(46980202-46980276)
chr1 (37-79)||(52190057-52190099)
chr1 (26-71)||(13037791-13037836)
chr1 (3-76)||(15489355-15489427)
chr1 (1-65)||(15360827-15360891)
chr1 (26-78)||(38651507-38651559)
chr1 (23-67)||(45769838-45769882)
chr1 (7-74)||(48282057-48282125)
[»] chr8 (19 HSPs)
chr8 (24-79)||(29170036-29170091)
chr8 (4-75)||(34563173-34563244)
chr8 (33-74)||(1433469-1433510)
chr8 (1-78)||(3645889-3645966)
chr8 (23-75)||(29699177-29699229)
chr8 (23-74)||(1117270-1117321)
chr8 (23-70)||(11188250-11188297)
chr8 (23-74)||(14482126-14482177)
chr8 (4-75)||(14949811-14949882)
chr8 (23-74)||(35534956-35535007)
chr8 (2-76)||(4558720-4558794)
chr8 (37-78)||(6918951-6918992)
chr8 (37-78)||(8629029-8629070)
chr8 (37-74)||(26813914-26813951)
chr8 (38-78)||(13652135-13652175)
chr8 (38-78)||(13710778-13710818)
chr8 (4-68)||(14929192-14929256)
chr8 (23-75)||(35298573-35298625)
chr8 (23-71)||(40356798-40356846)
[»] chr4 (18 HSPs)
chr4 (25-76)||(4191661-4191712)
chr4 (1-76)||(4663769-4663844)
chr4 (1-71)||(32724046-32724116)
chr4 (1-75)||(36734816-36734890)
chr4 (37-78)||(2980580-2980621)
chr4 (1-74)||(5219573-5219646)
chr4 (1-74)||(19422342-19422415)
chr4 (23-76)||(30024622-30024675)
chr4 (6-71)||(47970245-47970310)
chr4 (23-69)||(28623218-28623264)
chr4 (1-74)||(24193509-24193582)
chr4 (17-66)||(25717434-25717483)
chr4 (1-74)||(49219063-49219136)
chr4 (1-74)||(54325110-54325183)
chr4 (4-76)||(7022590-7022662)
chr4 (38-74)||(27321941-27321977)
chr4 (23-75)||(39929856-39929908)
chr4 (23-75)||(51555962-51556014)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-74)||(27500-27573)
[»] scaffold0508 (1 HSPs)
scaffold0508 (24-74)||(9871-9921)
[»] scaffold0060 (1 HSPs)
scaffold0060 (17-78)||(63374-63435)


Alignment Details
Target: chr6 (Bit Score: 630; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Original strand, 4325381 - 4326026
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaacacaagtatgctataagcgcctact 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4325381 ttatatgaaaatagtttgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaacacaagtatgctataagcgcctact 4325480  T
Q  101 tgaactgttcatccttaagaatctcaaagtcatagcattgagatgacaaaattctcaaatcacatttttgcattgtttcacaatgattcaggtaaaagac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4325481 tgaactgttcatccttaagaatctcaaagtcatagcattgagatgacaaaattctcaaatcacatttttgcattgtttcacgatgattcaggtaaaagac 4325580  T
Q  201 tgggttgacagtatttcgagagattggaagtttagaagaattatcccagctcacttctctgcaccaataaacgcaagtaggtctgatttccgtgccgcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4325581 tgggttgacagtatttcgagagattggaagtttagaagaattatcccagctcacttctctgcaccaataaacgcaagtaggtctgatttccgtgccgcat 4325680  T
Q  301 ttgcatttctggacgagtttttggatgaccggtatgatgcttggccttcactttcccttctgttttcatcgatcaaaggaaaagcagccagttactttcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4325681 ttgcatttctggacgagtttttggatgaccggtatgatgcttggccttcactttcccttctgttttcatcgatcaaaggaaaagcagccagttactttcc 4325780  T
Q  401 tcccgatgacatgagaaccttatcatctcttgacgagtttttggtctcagttggagctgtgaagaaaactgttgcaggaaggaagagatgagagagcatg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4325781 tcccgatgacatgagaaccttatcatctcttgacgagtttttggtctcagttggagctgtgaagaaaactgttgcaggaaggaagagatgagagagcatg 4325880  T
Q  501 aatatatcacttgcaaattgcaattacttgtcaacttggcaaatggtatattgcatatagttttgttaatttaggaggttgattcttcttaaacaaaatg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4325881 aatatatcacttgcaaattgcaattacttgtcaacttggcaaatggtatattgcatatagttttgttaatttaggaggttgattcttcttaaacaaaatg 4325980  T
Q  601 taaatgttttacattggaataggcatatatatgatgtccatctcat 646  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  4325981 taaatgttttacattggaataggcatatatatgttgtccatttcat 4326026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 513 - 615
Target Start/End: Original strand, 4331433 - 4331535
Alignment:
Q  513 gcaaattgcaattacttgtcaacttggcaaatggtatattgcatatagttttgttaatttaggaggttgattcttcttaaacaaaatgtaaatgttttac 612  Q
    ||||||||||| ||||||||||||| ||| ||| |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  4331433 gcaaattgcaactacttgtcaactttgcagatgatatagtgcctatagttttgttaatttagaaggttgattcttcttaaacaaaatgtaaatgtttcac 4331532  T
Q  613 att 615  Q
    |||    
T  4331533 att 4331535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 312 - 481
Target Start/End: Original strand, 4331261 - 4331433
Alignment:
Q  312 gacgagtttttggatgaccggtatgatgcttggccttcactttcccttctgttttcatcgatcaaaggaaaagcagccagttactttcctcccgatgaca 411  Q
    ||||||||| ||||  ||||||| ||| |||||||||||||||| || ||||||||||  |||||||||||| ||||||| || |||||||| |||||||    
T  4331261 gacgagtttatggactaccggtacgatacttggccttcactttctctcctgttttcatgaatcaaaggaaaaacagccagctattttcctcctgatgaca 4331360  T
Q  412 tgag---aaccttatcatctcttgacgagtttttggtctcagttggagctgtgaagaaaactgttgcaggaag 481  Q
    ||||    || |||||||  |||||| | ||||| || ||| |  | | ||||||||||||||||||||||||    
T  4331361 tgagttagacattatcattacttgaccaatttttagtatcaataagtgatgtgaagaaaactgttgcaggaag 4331433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 8420292 - 8420343
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  8420292 tattttatcatttattaaagaaataacttgtacataagcacttatatgataa 8420343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 2514677 - 2514626
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||| |||||||    
T  2514677 tattttatcttttattatagaaatagcttatacataagcacttacatgataa 2514626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 4247731 - 4247784
Alignment:
Q  25 ttttatcatttattatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||||| ||| ||||||||||| |||| ||||||||||||| |||||||||||    
T  4247731 ttttatcttttgttatagaaatagcttatacataagcacttacatgataaacac 4247784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5328971 - 5328898
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    |||||| ||||| || || || ||||||||| ||| |||||||||||||||| || ||||||||| ||||||||    
T  5328971 ttatataaaaatggtttgactttattttatcttttgttatagaaataacttaaacgtaagcacttttatgataa 5328898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10452433 - 10452505
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgata 73  Q
    ||||||||||||||| ||  | ||||||||  ||| ||||||||||| |||| ||||||||||| ||||||||    
T  10452433 ttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 32843412 - 32843456
Alignment:
Q  25 ttttatcatttattatagaaataacttagacataagcacttatat 69  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||    
T  32843412 ttttatctcttattatagaaataacttatacataagcacttatat 32843456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 30523635 - 30523581
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||    
T  30523635 tattttatcatttgttata-aaataactaagacatacgcacttatatgatagacac 30523581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 33068656 - 33068707
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| ||| |||||||||||||||| ||||||||| |||| ||||||    
T  33068656 tattttatcttttgttatagaaataacttatacataagcatttatttgataa 33068707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27889917 - 27889990
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    ||||||||||||||| ||  | |||||||||  || |||||||||||||||  ||||||||||| ||||||||||    
T  27889917 ttatatgaaaatagtttgaat-tattttatctgttgttatagaaataacttgtacataagcactcatatgataaa 27889990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31420955 - 31420881
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    |||||| |||||||| ||  | ||||||| ||||||||||||||||| |||| | |||| ||||||||| |||||    
T  31420955 ttatataaaaatagtttgattttattttaccatttattatagaaatagcttataaataaacacttatataataaa 31420881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 31668781 - 31668831
Alignment:
Q  24 attttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    |||||||  ||| ||||||||||| |||| |||||||||||||||||||||    
T  31668781 attttatgttttgttatagaaatagcttatacataagcacttatatgataa 31668831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3217263 - 3217336
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||||| | || || ||||||||| | | ||| | ||||| |||| |||||||||||||||||||||    
T  3217263 ttatatgaaaataatttgactttattttatcttctcttacaaaaatagcttatacataagcacttatatgataa 3217336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 5554861 - 5554910
Alignment:
Q  24 attttatcatttattatagaaataacttagacataagcacttatatgata 73  Q
    |||||||| ||| |||||||||||||||| |||||| ||| |||||||||    
T  5554861 attttatcttttgttatagaaataacttatacataaacacgtatatgata 5554910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 6647350 - 6647309
Alignment:
Q  37 ttatagaaataacttagacataagcacttatatgataaacac 78  Q
    |||||||||||||||| ||||||||||| ||||||| |||||    
T  6647350 ttatagaaataacttatacataagcactcatatgatgaacac 6647309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 6654589 - 6654544
Alignment:
Q  24 attttatcatttattatagaaataacttagacataagcacttatat 69  Q
    ||||||| |||| |||||||||||||||| |||||||| |||||||    
T  6654589 attttattatttgttatagaaataacttatacataagcccttatat 6654544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 8010318 - 8010277
Alignment:
Q  37 ttatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||||||||| |||| || ||||||||||||||||||||||    
T  8010318 ttatagaaatagcttatacctaagcacttatatgataaacac 8010277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 31670970 - 31671023
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    |||||||||  || |||||||||| ||||| | |||||||||||||||||||||    
T  31670970 tattttatctattgttatagaaatgacttatatataagcacttatatgataaac 31671023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 32578059 - 32578096
Alignment:
Q  37 ttatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  32578059 ttatagaaatagcttacacataagcacttatatgataa 32578096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 4006689 - 4006645
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttat 67  Q
    ||||||||||||| ||||||||||| ||||  |||||||||||||    
T  4006689 tattttatcatttgttatagaaatatcttatgcataagcacttat 4006645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 992067 - 991990
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||||||||||| | ||||| ||||||||  ||| ||||||||| |||||| || ||||||||||||||||||||||    
T  992067 ttatatgaaaatattttgtctttattttattttttgttatagaaacaacttatacgtaagcacttatatgataaacac 991990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27121659 - 27121732
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||| | | || || ||||||||||||||||||||||||| |||| ||||||| | |||||||||||    
T  27121659 ttatatgaaaacaatttgactttattttatcatttattatagaaatatcttatacataaggaattatatgataa 27121732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 6552346 - 6552416
Alignment:
Q  4 tatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    |||||||||||| | |  |||||||||| ||| || ||||||||||||  |||||||||||||||||||||    
T  6552346 tatgaaaatagtttatagctattttatcttttgttgtagaaataacttgtacataagcacttatatgataa 6552416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33894619 - 33894544
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaaca 77  Q
    ||||||||||| ||| || || ||||||||| ||| ||||||||||| |||| ||||||||||||| ||||| ||||    
T  33894619 ttatatgaaaacagtttgact-tattttatcttttgttatagaaatagcttatacataagcacttacatgatgaaca 33894544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 7244696 - 7244625
Alignment:
Q  4 tatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    |||||||| ||| || || | ||||||| |||  |||||||||| |||| ||||||||||||||||||||||    
T  7244696 tatgaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataaa 7244625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 26935645 - 26935696
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||||| ||||| ||||| |||| ||| |||||||||||||||||    
T  26935645 tattttatcatttgttataaaaatagcttacacaaaagcacttatatgataa 26935696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 33646059 - 33646106
Alignment:
Q  28 tatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    |||| ||||||||| ||||||||||||||||  |||||||||||||||    
T  33646059 tatcttttattatataaataacttagacatagacacttatatgataaa 33646106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 45593792 - 45593867
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    ||||||||||| ||| || || ||||||||  ||| ||| ||||||| |||| ||||||||| |||||||||||||    
T  45593792 ttatatgaaaacagtttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgataaac 45593867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 47004082 - 47004008
Alignment:
Q  3 atatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaaca 77  Q
    |||| |||||||| || || |||||||||  || ||||||||||| |||| | |||| |||||||||||||||||    
T  47004082 atataaaaatagtttgactttattttatctattgttatagaaatagcttacatataaacacttatatgataaaca 47004008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 8445267 - 8445206
Alignment:
Q  17 tgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||| ||||||||| ||| ||||| ||||| |||| | | |||||||||||||||||||||    
T  8445267 tgtctttattttatcttttgttataaaaatagcttataaacaagcacttatatgataaacac 8445206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 24973919 - 24973870
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgat 72  Q
    ||||||||| ||| ||||||||||| |||  |||||||||||||||||||    
T  24973919 tattttatcttttgttatagaaatagcttttacataagcacttatatgat 24973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 27481391 - 27481443
Alignment:
Q  25 ttttatcatttattatagaaataacttagacataagcacttatatgataaaca 77  Q
    ||||||| ||| ||||||||||| |||| |||||| ||||||||| |||||||    
T  27481391 ttttatcctttgttatagaaatagcttatacataaacacttatataataaaca 27481443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1147 - 1219
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgata 73  Q
    |||||||| |||||| || || ||||||||| ||| ||||||||||| |||| ||||||||||||||||||||    
T  1147 ttatatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2828 - 2756
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgata 73  Q
    |||||||| |||||| || || ||||||||| ||| ||||||||||| |||| ||||||||||||||||||||    
T  2828 ttatatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 42595 - 42540
Alignment:
Q  20 ctctattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    |||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||    
T  42595 ctctattttatcttttgttatagaaatgacttatacataagcacttatatgataaa 42540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35135735 - 35135804
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatg 70  Q
    ||||||||||||||| || || ||||||||| ||| ||||||||||| |||| |||||| ||||||||||    
T  35135735 ttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacacttatatg 35135804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 40097495 - 40097552
Alignment:
Q  20 ctctattttatcatttattatagaaataacttagacataagcacttatatgataaaca 77  Q
    |||||||||||| | | |||||||||||||||| ||||| ||||||||||||||||||    
T  40097495 ctctattttatcttctgttatagaaataacttatacatacgcacttatatgataaaca 40097552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 40499773 - 40499821
Alignment:
Q  26 tttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||||    
T  40499773 tttatcatttgttatagaaataacttgtacataagcacttatatgataa 40499821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 20982230 - 20982281
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| ||| ||||||||||| |||| |||||||||||||||||||||    
T  20982230 tattttatcctttgttatagaaatagcttatacataagcacttatatgataa 20982281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 37063147 - 37063217
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatga 71  Q
    ||||||||||||||| || || ||||||||| ||| |||||||||||  ||| ||||||||| ||||||||    
T  37063147 ttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataagcatttatatga 37063217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 7096203 - 7096271
Alignment:
Q  4 tatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgat 72  Q
    ||||||||| || || || ||||||||| ||| ||||||||||| |||| |||||||||||| ||||||    
T  7096203 tatgaaaatggtttgactttattttatcttttgttatagaaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 13224404 - 13224353
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| ||| ||||||||||| |||| |||||||||||| ||||||||    
T  13224404 tattttatcttttgttatagaaatagcttatacataagcacttctatgataa 13224353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 26516273 - 26516222
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| ||| || |||||||| |||| |||||||||||||||||||||    
T  26516273 tattttatcttttgttttagaaatagcttatacataagcacttatatgataa 26516222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 37690733 - 37690787
Alignment:
Q  24 attttatcatttattatagaaataacttagacataagcacttatatgataaacaca 79  Q
    |||||||| |||||||||||||||||||  |||| |||||||| ||||||||||||    
T  37690733 attttatcttttattatagaaataacttttacat-agcacttaaatgataaacaca 37690787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 18704133 - 18704179
Alignment:
Q  26 tttatcatttattatagaaataacttagacataagcacttatatgat 72  Q
    |||||| ||| |||||||||||||||| ||||||| |||||||||||    
T  18704133 tttatcttttgttatagaaataacttatacataagaacttatatgat 18704179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 40048375 - 40048419
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttat 67  Q
    ||||||||| ||| ||||||||| |||||| ||||||||||||||    
T  40048375 tattttatcttttgttatagaaacaacttatacataagcacttat 40048419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 16790183 - 16790236
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    ||||||||| ||| |||||||||||||||| | |||||||||||||||||||||    
T  16790183 tattttatcttttgttatagaaataacttatatataagcacttatatgataaac 16790236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27792869 - 27792794
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    ||||||||||||||| || |  ||||||||| ||| || | |||||| |||| |||||||||||||||||||||||    
T  27792869 ttatatgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgataaac 27792794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22232823 - 22232750
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||| ||| || || ||||||||||||| ||||| ||||| |||| |||| |||| |||||||||||    
T  22232823 ttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataa 22232750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 24158604 - 24158645
Alignment:
Q  30 tcatttattatagaaataacttagacataagcacttatatga 71  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  24158604 tcatttgttatagaaataacttatacataagcacttatatga 24158645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 54775125 - 54775052
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    |||||| ||||| || || || ||||||||| ||| |||||||||||||||| || ||||||||| ||||||||    
T  54775125 ttatataaaaatggtttgactttattttatcttttgttatagaaataacttaaacgtaagcacttttatgataa 54775052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20143921 - 20143871
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataactta 52  Q
    ||||||||||||||| || || ||||||||| ||||||||||||||||||||    
T  20143921 ttatatgaaaatagtttgact-tattttatcttttattatagaaataactta 20143871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23269268 - 23269318
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataactta 52  Q
    ||||||||||||||| || || ||||||||| ||||||||||||||||||||    
T  23269268 ttatatgaaaatagtttgact-tattttatcttttattatagaaataactta 23269318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 39971294 - 39971243
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| ||| ||||| || ||||||| |||||||||||||||||||||    
T  39971294 tattttatcttttgttatataagtaacttatacataagcacttatatgataa 39971243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 41028946 - 41028997
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    |||||| || ||| ||||||||||| |||| |||||||||||||||||||||    
T  41028946 tattttttcttttgttatagaaatagcttatacataagcacttatatgataa 41028997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 14548819 - 14548865
Alignment:
Q  33 tttattatagaaataacttagacataagcacttatatgataaacaca 79  Q
    |||||||||||||||||||  |||| |||||||| ||||||||||||    
T  14548819 tttattatagaaataacttttacattagcacttaaatgataaacaca 14548865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 20173983 - 20174029
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatat 69  Q
    ||||||||| ||| |||||||||||||| | ||||||||||||||||    
T  20173983 tattttatcttttgttatagaaataactaatacataagcacttatat 20174029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 28283675 - 28283725
Alignment:
Q  26 tttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    |||||| ||| |||||||| |||||||  ||||||||||||||||||||||    
T  28283675 tttatcttttgttatagaagtaacttatgcataagcacttatatgataaac 28283725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 2304335 - 2304380
Alignment:
Q  22 ctattttatcatttattatagaaataacttagacataagcacttat 67  Q
    |||||||||| ||||||||||||||| |||| |||||| |||||||    
T  2304335 ctattttatcttttattatagaaatagcttatacataatcacttat 2304380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 20504185 - 20504136
Alignment:
Q  25 ttttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||| |||||||| || ||||| |||||||||||| |||||||    
T  20504185 ttttatcatttgttatagaagtagcttaggcataagcacttaaatgataa 20504136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 43116524 - 43116577
Alignment:
Q  24 attttatcatttattatagaaataacttagacataagcacttatatgataaaca 77  Q
    |||||||| ||| ||||||||||| |||| |||||| ||||| |||||||||||    
T  43116524 attttatcttttgttatagaaatagcttacacataaacacttgtatgataaaca 43116577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1395668 - 1395604
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcactt 65  Q
    ||||||||||||| | || || ||||||||| ||| ||||||||||| |||| ||||| ||||||    
T  1395668 ttatatgaaaataatttgactttattttatcttttgttatagaaatagcttatacatatgcactt 1395604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 16790451 - 16790503
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    |||||||||  || ||||| ||||| |||| ||||||||||||||||||||||    
T  16790451 tattttatctgttgttataaaaatagcttatacataagcacttatatgataaa 16790503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 25185965 - 25185913
Alignment:
Q  26 tttatcatttattatagaaataacttagacataagcacttatatgataaacac 78  Q
    |||||| ||| ||||| ||||| ||||  ||||||||||||||||||||||||    
T  25185965 tttatcttttgttatataaatatcttattcataagcacttatatgataaacac 25185913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 32703113 - 32703061
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    ||||||||| ||||| ||||||||| |||| |||||| || ||||||||||||    
T  32703113 tattttatcttttataatagaaatagcttatacataaacatttatatgataaa 32703061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 38462277 - 38462205
Alignment:
Q  2 tatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    |||||||||| ||| || || ||||||||| |||  |||||||||| |||| | |||| ||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataa 38462205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 53736186 - 53736250
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcactt 65  Q
    ||||||||||||||| || |  ||||||||| ||| |||||||||||||| | || |||||||||    
T  53736186 ttatatgaaaatagtttgacattattttatcttttgttatagaaataactcatacgtaagcactt 53736250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17952774 - 17952847
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||||||| || || ||||||||| ||| ||||||||||| |||| | |||||| ||||||||||||    
T  17952774 ttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataa 17952847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 10150730 - 10150679
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||||| ||||    
T  10150730 tattttatcttttattatagaaataacttatacataaacacttatataataa 10150679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28803579 - 28803652
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||  ||| || || ||||||||| ||| |||| ||||||||||| | |||||||||||||||||||    
T  28803579 ttatatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataa 28803652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 3673782 - 3673727
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||||||  ||| |||||||||||||| | |||||||||||||||||| ||||||    
T  3673782 tattttatattttgttatagaaataactaatacataagcacttatatgacaaacac 3673727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 4550752 - 4550701
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| |||||||| |||| |||||| |||||||||||||| ||||||    
T  4550752 tattttatcttttattatggaaacaacttatacataagcacttatgtgataa 4550701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 10143146 - 10143103
Alignment:
Q  24 attttatcatttattatagaaataacttagacataagcacttat 67  Q
    |||||||| ||| |||||||||||||||| ||||||||||||||    
T  10143146 attttatcttttgttatagaaataacttatacataagcacttat 10143103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14209274 - 14209199
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    ||||||||||| ||| ||  | ||||||||| ||| |||| |||||| |||||||| || ||||||||||||||||    
T  14209274 ttatatgaaaacagtttgaatttattttatcttttgttattgaaatagcttagacagaaacacttatatgataaac 14209199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 27288608 - 27288557
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| ||||||||||||| |||||  ||||||||||||||| |||||    
T  27288608 tattttatcttttattatagaaacaacttttacataagcacttataggataa 27288557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 18884842 - 18884804
Alignment:
Q  37 ttatagaaataacttagacataagcacttatatgataaa 75  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  18884842 ttatagaaataacttatacatgagcacttatatgataaa 18884804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 2400117 - 2400080
Alignment:
Q  37 ttatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  2400117 ttatagaaacaacttatacataagcacttatatgataa 2400080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 18962111 - 18962188
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||||||||| ||| |  || ||||||||| ||| ||||| ||||| || | ||||||||||||| |||||||||||    
T  18962111 ttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcacttacatgataaacac 18962188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3102690 - 3102614
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaaca 77  Q
    |||||| |||||||| || || ||||||||  |||  |||| ||||| |||| ||||||||| ||||||||||||||    
T  3102690 ttatataaaaatagtttgactttattttatattttgctataaaaatagcttatacataagcagttatatgataaaca 3102614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3458654 - 3458598
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacat 57  Q
    ||||||||||| ||| || || ||||||||| ||| ||||| |||||||||||||||    
T  3458654 ttatatgaaaaaagtttgactttattttatcttttgttataaaaataacttagacat 3458598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 11393476 - 11393516
Alignment:
Q  38 tatagaaataacttagacataagcacttatatgataaacac 78  Q
    |||||||||| |||| | |||||||||||||||||||||||    
T  11393476 tatagaaatagcttatagataagcacttatatgataaacac 11393516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 11410137 - 11410177
Alignment:
Q  38 tatagaaataacttagacataagcacttatatgataaacac 78  Q
    |||||||||| |||| | |||||||||||||||||||||||    
T  11410137 tatagaaatagcttatagataagcacttatatgataaacac 11410177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 25609771 - 25609727
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttat 67  Q
    ||||||||| ||| ||||||||||| |||| ||||||||||||||    
T  25609771 tattttatcttttcttatagaaatagcttatacataagcacttat 25609727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 35809889 - 35809857
Alignment:
Q  42 gaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||| |||||||||||||||||||||    
T  35809889 gaaataacttatacataagcacttatatgataa 35809857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 44267074 - 44267110
Alignment:
Q  33 tttattatagaaataacttagacataagcacttatat 69  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  44267074 tttattatagaaataacttatacataagcagttatat 44267110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 45804274 - 45804209
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcactta 66  Q
    ||||||||||||||| || || |||||||| ||||||||||||||||||||  | |||||||||||    
T  45804274 ttatatgaaaatagtttgactttattttattatttattatagaaataacttttatataagcactta 45804209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 4202227 - 4202277
Alignment:
Q  26 tttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    |||||| ||| |||||||||||||||| || ||||||||||||||||||||    
T  4202227 tttatcttttgttatagaaataacttatacttaagcacttatatgataaac 4202277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 49692123 - 49692181
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataa 59  Q
    |||||| || |||||||| || ||||||||| |||||||||||||||||||| ||||||    
T  49692123 ttatataaatatagtctgactttattttatcctttattatagaaataacttatacataa 49692181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 45234191 - 45234118
Alignment:
Q  4 tatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaaca 77  Q
    |||||||||| | || || ||||||||| ||||||||||||||||| |  ||| ||||||| ||||||||||||    
T  45234191 tatgaaaataatttgactttattttatcttttattatagaaataacatgtacaaaagcactcatatgataaaca 45234118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 45107619 - 45107548
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgata 73  Q
    ||||||||||||||| || || ||||||||  ||| ||||||||||| |||| | ||||||||||||||||||    
T  45107619 ttatatgaaaatagtttgactttattttatt-tttcttatagaaatagcttatagataagcacttatatgata 45107548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 16980801 - 16980750
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||| ||||| || ||||||| ||||| |||||||||||||||||||||    
T  16980801 tattttaccattttttgtagaaatgacttatacataagcacttatatgataa 16980750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29007789 - 29007848
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataag 60  Q
    ||||||||||||||| || || || ||| || ||| ||||||||||||||||||||||||    
T  29007789 ttatatgaaaatagtttgactttaatttttcttttgttatagaaataacttagacataag 29007848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 49557116 - 49557065
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| ||| |||||||||||||||| |||  ||||||||||||||||    
T  49557116 tattttatcttttgttatagaaataacttatacagcagcacttatatgataa 49557065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 46980202 - 46980276
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    ||||||||||| ||| ||||| ||||||||| |||  |||| ||| ||||||  |||| ||||||||||||||||    
T  46980202 ttatatgaaaacagtttgtctttattttatcttttgatataaaaacaacttatgcatatgcacttatatgataaa 46980276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 52190099 - 52190057
Alignment:
Q  37 ttatagaaataacttagacataagcacttatatgataaacaca 79  Q
    ||||||||| |||||| |||||| |||||||||||||||||||    
T  52190099 ttatagaaaaaacttatacataaacacttatatgataaacaca 52190057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 13037836 - 13037791
Alignment:
Q  26 tttatcatttattatagaaataacttagacataagcacttatatga 71  Q
    |||||| ||| ||||||||||| |||| ||||||||||||||||||    
T  13037836 tttatcttttgttatagaaatagcttatacataagcacttatatga 13037791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 15489427 - 15489355
Alignment:
Q  3 atatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    ||||||||||||| || || ||||| ||||||| | | ||||||| |||| ||||||||||||| |||||||||    
T  15489427 atatgaaaatagtttgactttattt-atcatttgtcacagaaatagcttatacataagcacttaaatgataaac 15489355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15360891 - 15360827
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcactt 65  Q
    ||||||||||| ||| || || ||||||||| ||| |||||||||||||| | |||||| |||||    
T  15360891 ttatatgaaaacagtttgactttattttatcttttgttatagaaataactaatacataaacactt 15360827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 38651507 - 38651559
Alignment:
Q  26 tttatcatttattatagaaataacttagacataagcacttatatgataaacac 78  Q
    |||||| ||| |||||||| || |||| ||||||||||||| |||||||||||    
T  38651507 tttatcttttgttatagaattagcttatacataagcacttacatgataaacac 38651559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 45769838 - 45769882
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttat 67  Q
    ||||||||| ||| |||||||||||| ||| ||||||||||||||    
T  45769838 tattttatcttttgttatagaaataatttacacataagcacttat 45769882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 48282125 - 48282057
Alignment:
Q  7 gaaaatagtctgtctctattttatcatt-tattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| || || ||||||||| || | ||||||||||| |||  |||||||||||||||||||||    
T  48282125 gaaaatagtttgactttattttatctttcttttatagaaatagcttttacataagcacttatatgataa 48282057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 29170036 - 29170091
Alignment:
Q  24 attttatcatttattatagaaataacttagacataagcacttatatgataaacaca 79  Q
    ||||||||  || ||||||||| |||||| ||||||||||||||||||||||||||    
T  29170036 attttatctattcttatagaaagaacttatacataagcacttatatgataaacaca 29170091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 34563244 - 34563173
Alignment:
Q  4 tatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    ||||||||| || || || ||||||||| ||| | |||||||||||||| | ||||||||||||||||||||    
T  34563244 tatgaaaattgtttgactttattttatcctttgtcatagaaataacttatatataagcacttatatgataaa 34563173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 1433510 - 1433469
Alignment:
Q  33 tttattatagaaataacttagacataagcacttatatgataa 74  Q
    |||||||||||||||||||| |||||| ||||||||||||||    
T  1433510 tttattatagaaataacttatacataaccacttatatgataa 1433469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 3645889 - 3645966
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||||||||||||| ||  | | ||||||  ||| ||||||||||| |||| ||| |||||||||||||||||||||    
T  3645889 ttatatgaaaatagtttgattttgttttatattttcttatagaaatagcttatacacaagcacttatatgataaacac 3645966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 29699229 - 29699177
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    ||||||||| ||| |||||||||||||||  ||||||||| ||||||||||||    
T  29699229 tattttatcttttgttatagaaataacttgtacataagcatttatatgataaa 29699177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 1117321 - 1117270
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||||  ||||||||| |||||| |||||| ||||||||||||||    
T  1117321 tattttatcattcgttatagaaacaacttacacataatcacttatatgataa 1117270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 11188250 - 11188297
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatg 70  Q
    ||||||||| ||| ||||||||| |||||| |||||||||||||||||    
T  11188250 tattttatcttttgttatagaaacaacttatacataagcacttatatg 11188297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 14482177 - 14482126
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||| ||| |||||||||||  ||| |||||||||||||||||||||    
T  14482177 tattttatcttttgttatagaaatagtttatacataagcacttatatgataa 14482126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 14949882 - 14949811
Alignment:
Q  4 tatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    |||||||| ||| || |||||||||||| ||| |||||||| || |||| ||||||| |||| |||||||||    
T  14949882 tatgaaaagagtttgactctattttatcttttgttatagaagtagcttatacataagaacttgtatgataaa 14949811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 35534956 - 35535007
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||| | ||||||||||||||| |||| | |||||||||||||||||||    
T  35534956 tattttaacttttattatagaaatagcttatatataagcacttatatgataa 35535007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 4558794 - 4558720
Alignment:
Q  2 tatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    |||||||||||| | |  || ||||||||| ||||||||||||||| |||| |||||| |||||| || ||||||    
T  4558794 tatatgaaaataatttaactttattttatcttttattatagaaatagcttatacataaacacttacataataaac 4558720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 6918992 - 6918951
Alignment:
Q  37 ttatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||| ||||| |||| |||||||||||||||||||||||||    
T  6918992 ttataaaaatagcttatacataagcacttatatgataaacac 6918951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 8629070 - 8629029
Alignment:
Q  37 ttatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||||||||| |||| | |||||||||||||||||||||||    
T  8629070 ttatagaaatagcttataaataagcacttatatgataaacac 8629029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 26813914 - 26813951
Alignment:
Q  37 ttatagaaataacttagacataagcacttatatgataa 74  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  26813914 ttatagaaataatttatacataagcacttatatgataa 26813951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 13652175 - 13652135
Alignment:
Q  38 tatagaaataacttagacataagcacttatatgataaacac 78  Q
    |||||||||| |||| ||||||||||||| |||||||||||    
T  13652175 tatagaaatagcttatacataagcacttagatgataaacac 13652135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 13710818 - 13710778
Alignment:
Q  38 tatagaaataacttagacataagcacttatatgataaacac 78  Q
    |||||||||| |||| ||||||||||||| |||||||||||    
T  13710818 tatagaaatagcttatacataagcacttagatgataaacac 13710778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 14929192 - 14929256
Alignment:
Q  4 tatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttata 68  Q
    |||||||| ||| || ||||||||| || ||||||||||||||| ||||  | ||||||||||||    
T  14929192 tatgaaaacagtttgactctattttgtcttttattatagaaatagcttatgcgtaagcacttata 14929256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 35298573 - 35298625
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    ||||||||| ||| |||  |||||| |||| ||||||||||||||||||||||    
T  35298573 tattttatcttttgttactgaaatagcttatacataagcacttatatgataaa 35298625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 40356846 - 40356798
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatga 71  Q
    ||||||||| ||||||||| ||||| |||| | ||||||||||||||||    
T  40356846 tattttatcttttattatataaatagcttatagataagcacttatatga 40356798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 4191712 - 4191661
Alignment:
Q  25 ttttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    ||||||| ||| ||||||||||| |||| |||||||||||||||||||||||    
T  4191712 ttttatcttttgttatagaaatagcttatacataagcacttatatgataaac 4191661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4663769 - 4663844
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    |||||| |||||||| || ||  |||||||  ||| |||||||||||||||| ||||||||||||||| |||||||    
T  4663769 ttatataaaaatagtttggcttcattttattctttgttatagaaataacttatacataagcacttatacgataaac 4663844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 32724116 - 32724046
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatga 71  Q
    ||||||||||||||| || || ||||||||| ||| | |||||||||  ||||||||||||||| ||||||    
T  32724116 ttatatgaaaatagtttgactttattttatcttttgtaatagaaatagattagacataagcactgatatga 32724046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 36734890 - 36734816
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    ||||||||||||||| || || ||||||| | ||| ||||||||| |  ||| ||||||||||||||||||||||    
T  36734890 ttatatgaaaatagtttgactttattttaccttttgttatagaaagagattatacataagcacttatatgataaa 36734816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 2980580 - 2980621
Alignment:
Q  37 ttatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  2980580 ttatagaaatagcttatacataagcacttatatgataaacac 2980621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5219573 - 5219646
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||||||| |  || ||||||||| ||||||||||| ||| | || |||| ||||||||||||||||    
T  5219573 ttatatgaaaatagtttaactttattttatcttttattatagagatagcatatacatgagcacttatatgataa 5219646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19422415 - 19422342
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    |||||||||||  || || || |||| |||| ||| |||||||||||||||| ||||||||| |||||||||||    
T  19422415 ttatatgaaaaatgtttgactttattatatcttttgttatagaaataacttatacataagcatttatatgataa 19422342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 30024675 - 30024622
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    ||||||||| ||| ||||||||||||||||  |||||| |||||||||||||||    
T  30024675 tattttatcttttgttatagaaataacttatgcataagtacttatatgataaac 30024622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 47970310 - 47970245
Alignment:
Q  6 tgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatga 71  Q
    |||||||||| || ||  |||||||| ||| ||||||||||| |||| ||||||||||||||||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatga 47970245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 28623264 - 28623218
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatat 69  Q
    ||||||||| ||| ||||| |||||||||| ||||||||||||||||    
T  28623264 tattttatcttttgttatataaataacttatacataagcacttatat 28623218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 24193582 - 24193509
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||||||| |  |||| ||||||  ||| || || |||||||||| ||||||| |||||||||||||    
T  24193582 ttatatgaaaatagtttaactctgttttatattttgttgtaaaaataacttatacataagtacttatatgataa 24193509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 25717483 - 25717434
Alignment:
Q  17 tgtctctattttatcatttattatagaaataacttagacataagcactta 66  Q
    ||||| ||||||||| || ||| ||||||||||||| |||||||||||||    
T  25717483 tgtctttattttatctttcattctagaaataacttatacataagcactta 25717434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 49219136 - 49219063
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||||| | || || ||||||||  ||| |||||||||||||||| || ||| |||| |||||||||    
T  49219136 ttatatgaaaataatttgactttattttatattttgttatagaaataacttatacctaaccactcatatgataa 49219063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 54325110 - 54325183
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||| ||| || || ||||||||| ||| | |||||||||  ||| ||| |||||||||||||||||    
T  54325110 ttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgataa 54325183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 7022662 - 7022590
Alignment:
Q  4 tatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaac 76  Q
    |||||||||| | || |||||||||||| ||| ||||| ||||| |||| |  ||||||||||||||| ||||    
T  7022662 tatgaaaataatttgactctattttatcttttcttataaaaatagcttataattaagcacttatatgagaaac 7022590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 27321941 - 27321977
Alignment:
Q  38 tatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  27321941 tatagaaataacttatacataaacacttatatgataa 27321977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 39929856 - 39929908
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    ||||||| | ||||| ||||||| |||||| ||||||||||||| ||||||||    
T  39929856 tattttaccttttataatagaaacaacttatacataagcacttaaatgataaa 39929908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 51555962 - 51556014
Alignment:
Q  23 tattttatcatttattatagaaataacttagacataagcacttatatgataaa 75  Q
    ||||||||| ||| |||||  |||| |||| ||||||||||||||||||||||    
T  51555962 tattttatcttttgttataataatagcttatacataagcacttatatgataaa 51556014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27573 - 27500
Alignment:
Q  1 ttatatgaaaatagtctgtctctattttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    ||||||||||| | | || || ||||||||| | | |||||||||||||||| ||||||||||||| |||||||    
T  27573 ttatatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataa 27500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 9871 - 9921
Alignment:
Q  24 attttatcatttattatagaaataacttagacataagcacttatatgataa 74  Q
    |||||||  ||| |||||||||||||||| |||||||||| ||||||||||    
T  9871 attttattttttgttatagaaataacttatacataagcacctatatgataa 9921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 63374 - 63435
Alignment:
Q  17 tgtctctattttatcatttattatagaaataacttagacataagcacttatatgataaacac 78  Q
    ||||| ||||||||| ||| ||||| ||||| |||| | | |||||||||||||||||||||    
T  63374 tgtctttattttatcttttgttataaaaatagcttataaacaagcacttatatgataaacac 63435  T

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