View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_41 (Length: 284)

Name: NF8581_low_41
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_41
NF8581_low_41
[»] chr4 (1 HSPs)
chr4 (1-284)||(51880833-51881117)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 51880833 - 51881117
Alignment:
Q  1 tcattctgctctgcaccaattggaccgtatttgcttctcgtgattggcaggtttgttcttccctagattttgtgtttctaaggctaccannnnnnn-ggt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  51880833 tcattctgctctgcaccaattggaccgtatttgcttctcgtgattggcaggtttgttcttccctagattttgtgtttctaaggctaccattttttttggt 51880932  T
Q  100 ccgtgcttcttgctgctctgtgttcagttttccatagctgagtatccaaggctgaagcctctgagaaaagtaagatttcaaagcctctagaaacttaaga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51880933 ccgtgcttcttgctgctctgtgttcagttttccatagctgagtatccaaggctgaagcctctgagaaaagtaagatttcaaagcctctagaaacttaaga 51881032  T
Q  200 ttcatagaatgttgttgcagtgtggttcttacttcttaggttaaggcctttcagaacaagtcgctaagaagttggatgatattga 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51881033 ttcatagaatgttgttgcagtgtggttcttacttcttaggttaaggcctttcagaacaagtcgctaagaagttggatgatattga 51881117  T

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