View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8581_low_47 (Length: 245)
Name: NF8581_low_47
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_47 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 40406140 - 40405916
Alignment:
| Q |
19 |
catggactattcttgtattcaagcatattagcaaacataaacaatataagagttctaaagcctaacaaaacaaggtggatctgctaatagttggtcctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40406140 |
catggactattcttgtattcaagcatattagcaaacataaacaatataagagttctaaagcctaacaaaacaaggtggatctgctaatagttggtcctta |
40406041 |
T |
|
| Q |
119 |
gaagtaaaagtttacaagtctagagtcctctcgccttactactaagactgtgatatgatcgatgtcggtttggcaaaatcatgaaaaagcgaatacagat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| || |
|
|
| T |
40406040 |
gaagtaaaagtttacaagtctagagtcctctcgccttactac--cgactgtgatatgatcgatgtctgtttggtaaaatcatgaaaaagcgaatacaaat |
40405943 |
T |
|
| Q |
219 |
ttagttttgaagcacatatatttgtct |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
40405942 |
ttagttttgaagcacatatatttgtct |
40405916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University