View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_48 (Length: 244)
Name: NF8581_low_48
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 3094132 - 3094365
Alignment:
| Q |
1 |
tgagaaaataatagattcaaaggcattttctccatttaaatacacaaacatgtcagtttctatgctacttaacatgacagcaaattcaccagtaaattta |
100 |
Q |
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| T |
3094132 |
tgagaaaataatagattcaaaggcattttctccatttaaatacacaaacatgtcagtttctatgctacttaacatgacagcaaattcaccagtaaattta |
3094231 |
T |
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| Q |
101 |
ttgcctaaacacacaaatacttcaatgtctttggaacaattttgtagagacactgtgatgactatatggcattatcatggtggttgtcaagttggtaggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094232 |
ttgcctaaacacacaaatacttcaatgtctttggaacaattttgtagagacactgtgatgactatatggcattatcatggtggttgtcaagttggtaggg |
3094331 |
T |
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| Q |
201 |
ttgttgatagtgattataaggttgctgatgtcca |
234 |
Q |
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| T |
3094332 |
ttgttgatagtgattataaggttgctggtgtcca |
3094365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3085286 - 3085508
Alignment:
| Q |
1 |
tgagaaaataatagattcaaaggcattttctccatttaaatacacaaacatgtcagtttctatgctacttaacatgacagcaaattcaccagtaaattta |
100 |
Q |
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| T |
3085286 |
tgagaaaataatagattcaaatgcttttgctccatttagatacaataacatatcattttctatgttacttaacatgattgcaaatgcacaagtaaattta |
3085385 |
T |
|
| Q |
101 |
ttgcctaaacacacaaatacttcaatgtctttggaacaattttgtagagacactgtgatgactatatggcattatcatggtggttgtcaagttggtaggg |
200 |
Q |
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| T |
3085386 |
ttgcctaagcacacaaatacttcaatgtctttggaacaattttgtagagacactgtgatgacaatatggcattatcatggtggttgtcaagttggtaggg |
3085485 |
T |
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| Q |
201 |
ttgttgatagtgattataaggtt |
223 |
Q |
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| T |
3085486 |
ttgttgataatgattataaggtt |
3085508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 42960094 - 42960045
Alignment:
| Q |
134 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
183 |
Q |
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||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
42960094 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
42960045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 404890 - 404934
Alignment:
| Q |
161 |
actatatggcattatcatggtggttgtcaagttggtagggttgtt |
205 |
Q |
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| T |
404890 |
actatatggcattatcatggtggatgtgttgttggtagggttgtt |
404934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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