View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_50 (Length: 242)

Name: NF8581_low_50
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_50
NF8581_low_50
[»] chr4 (2 HSPs)
chr4 (1-218)||(19421885-19422102)
chr4 (13-215)||(19428661-19428863)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 19421885 - 19422102
Alignment:
Q  1 tgaaagctgtgctgacaacagaagagagaaagccataacaataaagcaaggtggaggtgttggaatgatacttattgaccataatgccaaagaaattggt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19421885 tgaaagctttgctgacaacagaagagagaaagccataacaataaagcaaggcggaggtgttggaatgatacttattgaccataatgccaaagaaattggt 19421984  T
Q  101 tttcaatttgttattccaagcactcttattggtcgggatgcagtagaagagcttcaagcatacataaaaacggataagtgagtttttgaaaaaatctaca 200  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19421985 tttcaatttgttattccaagcactcttattggtcaggattcagtagaagagcttcaagcatacataaaaacggaaaagtgagtttttgaaaaaatctaca 19422084  T
Q  201 atatggaagttagtcaca 218  Q
    |||| |||||||||||||    
T  19422085 atatcgaagttagtcaca 19422102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 19428661 - 19428863
Alignment:
Q  13 tgacaacagaagagagaaagccataacaataaagcaaggtggaggtgttggaatgatacttattgaccataatgccaaagaaattggttttcaatttgtt 112  Q
    |||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19428661 tgacaacagaagagagaaggccataacagtaaggcaaggtggtggtgttggaatgatacttattgaccataatgccaaagaaattggttttcaattcgtt 19428760  T
Q  113 attccaagcactcttattggtcgggatgcagtagaagagcttcaagcatacataaaaacggataagtgagtttttgaaaaaatctacaatatggaagtta 212  Q
    ||||||||||||||||| |||| |||| |||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19428761 attccaagcactcttatcggtcaggattcagtggaaaagcttcaagcatacataaaagcggataggtgagtttttgaaaaaatctacaatatggaagtta 19428860  T
Q  213 gtc 215  Q
    |||    
T  19428861 gtc 19428863  T

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