View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_52 (Length: 234)
Name: NF8581_low_52
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 34689053 - 34689196
Alignment:
| Q |
71 |
tctttactttaaattctttactattgactgaagcagttccttctgaaccgcatttataagctcaacaaccagtactgtattttctaaggatacataaacc |
170 |
Q |
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| T |
34689053 |
tctttactttaaattctttactattgactgaagcagttccctctgaaccgcatttataagctcaacaaccagtactgtattttctaaggatacataaacc |
34689152 |
T |
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| Q |
171 |
ataaactaacaccagaattgcatgctctgtcaatattgtgtgtg |
214 |
Q |
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| T |
34689153 |
ataaactaacaccagaattgcatgctctgtcaatattgtgtgtg |
34689196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 34711465 - 34711608
Alignment:
| Q |
71 |
tctttactttaaattctttactattgactgaagcagttccttctgaaccgcatttataagctcaacaaccagtactgtattttctaaggatacataaacc |
170 |
Q |
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| T |
34711465 |
tctttactttaaattctttactattgactgaagcagttccctctgaaccgcatttataagctcaacaaccagtactgtattttctaaggatacataaacc |
34711564 |
T |
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| Q |
171 |
ataaactaacaccagaattgcatgctctgtcaatattgtgtgtg |
214 |
Q |
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| T |
34711565 |
ataaactaacaccagaattgcatgctctgtcaatattgtgtgtg |
34711608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 34689007 - 34688906
Alignment:
| Q |
1 |
tatattctttaaagtaaagaggtgtggcggccgcgaacagtggccgtggaatgactagtgctattaacaatctttactttaaattctttactattgactg |
100 |
Q |
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| T |
34689007 |
tatattctttaaagtaaagaggtgtggcggccgcgaacagtggccgtggaatgactagtgctattaacaatcgttactttaaattctttactattgactg |
34688908 |
T |
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| Q |
101 |
aa |
102 |
Q |
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|| |
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| T |
34688907 |
aa |
34688906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 34711419 - 34711318
Alignment:
| Q |
1 |
tatattctttaaagtaaagaggtgtggcggccgcgaacagtggccgtggaatgactagtgctattaacaatctttactttaaattctttactattgactg |
100 |
Q |
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| T |
34711419 |
tatattctttaaagtaaagaggtgtggcggccgcgaacagtggccgtggaatgactagtgctattaacaatcgttactttaaattctttactattgactg |
34711320 |
T |
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| Q |
101 |
aa |
102 |
Q |
| |
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|| |
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| T |
34711319 |
aa |
34711318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 16231218 - 16231163
Alignment:
| Q |
47 |
tggaatgactagtgctattaacaatctttactttaaattctttactattgactgaa |
102 |
Q |
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| T |
16231218 |
tggaatgactagtgctattaacaatctttaatttaaattctttactgttgattgaa |
16231163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 35925285 - 35925328
Alignment:
| Q |
59 |
tgctattaacaatctttactttaaattctttactattgactgaa |
102 |
Q |
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| T |
35925285 |
tgctattaacaatctttattttgaattctttactattgactgaa |
35925328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 34689833 - 34689784
Alignment:
| Q |
53 |
gactagtgctattaacaatctttactttaaattctttactattgactgaa |
102 |
Q |
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| T |
34689833 |
gactagtgctattaacaatcttaactttagactttttactattgactgaa |
34689784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 34712245 - 34712196
Alignment:
| Q |
53 |
gactagtgctattaacaatctttactttaaattctttactattgactgaa |
102 |
Q |
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|||||||||||||||||||||| |||||| | | |||||||||||||||| |
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| T |
34712245 |
gactagtgctattaacaatcttaactttagactttttactattgactgaa |
34712196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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