View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8581_low_57 (Length: 215)
Name: NF8581_low_57
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_57 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 14306782 - 14306961
Alignment:
| Q |
18 |
gatatacatgttatgttttcttttgaacatatttttattaggctcaaagcttacccttcaggcttcagtgtatcaacacagtttccttttcaggttcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14306782 |
gatatacatgttatgttttcttttgaacatatttttattaggctcaaagcgtaccctttaggcttcagtgtatcaacacagtttccttttcaggttcatg |
14306881 |
T |
|
| Q |
118 |
atctttcttgtgttttcattctcaaacctagggatggcaagactttctttaagaaaataattagataaatgacctgcgcgg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14306882 |
atctttcttgtgttttcattctcaaacctagggatggcaagactttctttaa-aaaataattagataaatgacctgcgcgg |
14306961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University