View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_59 (Length: 212)

Name: NF8581_low_59
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_59
NF8581_low_59
[»] chr2 (4 HSPs)
chr2 (45-194)||(38042656-38042806)
chr2 (45-199)||(38067006-38067153)
chr2 (45-159)||(38044678-38044793)
chr2 (45-167)||(38028051-38028166)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 45 - 194
Target Start/End: Complemental strand, 38042806 - 38042656
Alignment:
Q  45 tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggct-atgaaatgcccaaaga 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38042806 tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggctaatgaaatgcccaaaga 38042707  T
Q  144 atgggaaaataccaggggctgaaatctgatgttactctgttagtggttttc 194  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  38042706 atgggaaaataccaggtgctgaaagctgttgttactctgttagtggttttc 38042656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 38067153 - 38067006
Alignment:
Q  45 tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggctatgaaatgcccaaagaa 144  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||       ||||||||||||||||    
T  38067153 tcttgtgttttggttggttgatgaagaagagtgaagcaggttgttatatataggaagcttttaaatgctaaagttaa-------tgaaatgcccaaagaa 38067061  T
Q  145 tgggaaaataccaggggctgaaatctgatgttactctgttagtggttttcttttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38067060 tgggaaaataccaggggctgaaatctgatgttactctgttagtggttttcttttc 38067006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 38044793 - 38044678
Alignment:
Q  45 tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggct-atgaaatgcccaaaga 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38044793 tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggctaatgaaatgcccaaaga 38044694  T
Q  144 atgggaaaataccagg 159  Q
    ||||||||||||||||    
T  38044693 atgggaaaataccagg 38044678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 38028166 - 38028051
Alignment:
Q  45 tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggctatgaaatgcccaaagaa 144  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  38028166 tcttgtgttttggttggttgatgaagaagagtgaagcaggttgttatatataggaagctttgaaatgctaaagtta-------atgaaatgcccaaagaa 38028074  T
Q  145 tgggaaaataccaggggctgaaa 167  Q
    |||||||||||||| ||||||||    
T  38028073 tgggaaaataccagtggctgaaa 38028051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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