View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_6 (Length: 562)

Name: NF8581_low_6
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_6
NF8581_low_6
[»] chr8 (2 HSPs)
chr8 (315-550)||(44639889-44640124)
chr8 (219-260)||(4930509-4930550)
[»] chr2 (2 HSPs)
chr2 (212-260)||(27646190-27646238)
chr2 (211-252)||(27555941-27555982)
[»] chr6 (2 HSPs)
chr6 (205-259)||(15654418-15654473)
chr6 (212-260)||(15883303-15883351)
[»] chr4 (2 HSPs)
chr4 (205-258)||(17461554-17461607)
chr4 (212-260)||(13923047-13923095)
[»] chr5 (1 HSPs)
chr5 (205-256)||(36648277-36648328)
[»] chr7 (1 HSPs)
chr7 (365-401)||(19873410-19873446)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 315 - 550
Target Start/End: Complemental strand, 44640124 - 44639889
Alignment:
Q  315 taggcatgatgtggttagttcggtgttaattgtggttcgatagttactacttactaatttgaagaccattttaattttctaatgtacttctagaatatag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44640124 taggcatgatgtggttagttcggtgttaattgtggttcgatagttactacttactaatttgaagaccattttaattttctaatgtacttctagaatatag 44640025  T
Q  415 ctcaaaaccttaaagatttattgagttgtggaatggaacacacagagagtataagaagaactcattctaagctttcttcttgtccaaataaatgtatata 514  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44640024 ctcaaaaccttaaagatttattgagttgtggaatggaacacagagagagtataagaagaactcattctaagctttcttcttgtccaaataaatgtatata 44639925  T
Q  515 ttatgaagcgtaactttatacttcctccaactttga 550  Q
    ||||||||||||||||||||||||||||||||||||    
T  44639924 ttatgaagcgtaactttatacttcctccaactttga 44639889  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 4930509 - 4930550
Alignment:
Q  219 attcaatttctcatatcaatccattatatattttatatctcc 260  Q
    |||||||||||||||| ||||||||||||||| || ||||||    
T  4930509 attcaatttctcatataaatccattatatattgtacatctcc 4930550  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 27646190 - 27646238
Alignment:
Q  212 aaaattgattcaatttctcatatcaatccattatatattttatatctcc 260  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  27646190 aaaattgattcaatttctcatattcatccactatatattttatatctcc 27646238  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 27555941 - 27555982
Alignment:
Q  211 aaaaattgattcaatttctcatatcaatccattatatatttt 252  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||    
T  27555941 aaaaattgatttaatttttcatatcaatccactatatatttt 27555982  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 15654418 - 15654473
Alignment:
Q  205 aattttaaaaattgattcaatttctcatatcaatccattatatattt-tatatctc 259  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  15654418 aattttgagaattgattcaatttctcatatcaatccactatatatttgtatatctc 15654473  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 15883351 - 15883303
Alignment:
Q  212 aaaattgattcaatttctcatatcaatccattatatattttatatctcc 260  Q
    |||||| |||||||||||||||| ||| ||||||||||| || ||||||    
T  15883351 aaaatttattcaatttctcatataaattcattatatattgtacatctcc 15883303  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 17461607 - 17461554
Alignment:
Q  205 aattttaaaaattgattcaatttctcatatcaatccattatatattttatatct 258  Q
    |||||| ||||||||||||||||||||||| |||| | |||||||| |||||||    
T  17461607 aattttgaaaattgattcaatttctcatattaatctactatatattgtatatct 17461554  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 13923095 - 13923047
Alignment:
Q  212 aaaattgattcaatttctcatatcaatccattatatattttatatctcc 260  Q
    |||||| |||||||||||||||| ||||||||||||||| || ||||||    
T  13923095 aaaatttattcaatttctcatataaatccattatatattgtacatctcc 13923047  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 36648277 - 36648328
Alignment:
Q  205 aattttaaaaattgattcaatttctcatatcaatccattatatattttatat 256  Q
    |||||| ||||||||||||||||||||||| | |||| | ||||||||||||    
T  36648277 aatttttaaaattgattcaatttctcatataagtccactgtatattttatat 36648328  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 19873446 - 19873410
Alignment:
Q  365 ttactaatttgaagaccattttaattttctaatgtac 401  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  19873446 ttactaatttgaagaccatttttattttctgatgtac 19873410  T

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