View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_61 (Length: 206)
Name: NF8581_low_61
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 26991435 - 26991606
Alignment:
| Q |
17 |
agaccaattgcaggtccagtaaataaaacaatttccttcatctgaatccatatactctgctcaaccagttccttcacttcttcttcttgtgcttgttcct |
116 |
Q |
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| T |
26991435 |
agaccaattgcaggtccagtaaataaaacaatttccttcatctgaatccatatactctgctcaaccagttccttcacttcttcttcttgtgcttgttcct |
26991534 |
T |
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| Q |
117 |
tagaagaaacctcgctgatttgatctttttcttcagactcatctgcgacatcataattttgaactgagcaag |
188 |
Q |
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| T |
26991535 |
tagaagaaacctcgctgatttgatctttttcttcagactcatctgcgacatcataattttgaactgagcaag |
26991606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 27005881 - 27006037
Alignment:
| Q |
17 |
agaccaattgcaggtccagtaaataaaacaatttccttcatctgaatccatatactctgctcaaccagttccttcacttcttcttcttgtgcttgttcct |
116 |
Q |
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|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27005881 |
agaccaatagcaggtccagtaaacaatacaatttccttcatctgaatccatatactctgctcaaccagttccttcacttcttct---------------t |
27005965 |
T |
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| Q |
117 |
tagaagaaacctcgctgatttgatctttttcttcagactcatctgcgacatcataattttgaactgagcaag |
188 |
Q |
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| T |
27005966 |
tagaagaaacctcgctgatttgaactttttcttcagattcatctatagcatcgtaattttgaactgagcaag |
27006037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 26976025 - 26975935
Alignment:
| Q |
17 |
agaccaattgcaggtccagtaaataaaacaatttccttcatctgaatccatatactctgctcaacc---agttccttcacttcttcttctt |
104 |
Q |
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|||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
26976025 |
agaccaatagcaggtccagtaaacaatacaatttccttcatctgaatccatatactttgctcaaccagtagttccttcacttcttcttctt |
26975935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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