View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8581_low_62 (Length: 203)

Name: NF8581_low_62
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8581_low_62
NF8581_low_62
[»] chr8 (11 HSPs)
chr8 (1-203)||(22081062-22081264)
chr8 (6-203)||(44562932-44563132)
chr8 (6-203)||(9354453-9354653)
chr8 (6-203)||(19659223-19659423)
chr8 (45-172)||(19286332-19286459)
chr8 (51-133)||(19687971-19688053)
chr8 (48-133)||(16277424-16277509)
chr8 (48-133)||(27609165-27609250)
chr8 (45-133)||(18710453-18710541)
chr8 (48-133)||(2137519-2137604)
chr8 (48-85)||(19518451-19518488)
[»] chr4 (22 HSPs)
chr4 (1-203)||(15391563-15391765)
chr4 (3-203)||(14235750-14235956)
chr4 (41-203)||(15285153-15285318)
chr4 (3-203)||(15227713-15227916)
chr4 (44-203)||(1900141-1900303)
chr4 (6-203)||(24460830-24461030)
chr4 (45-172)||(54833272-54833399)
chr4 (48-130)||(5005755-5005837)
chr4 (48-130)||(30753627-30753709)
chr4 (36-130)||(33674114-33674208)
chr4 (48-133)||(27163618-27163703)
chr4 (36-130)||(39850496-39850590)
chr4 (48-133)||(17013885-17013970)
chr4 (48-133)||(21969586-21969671)
chr4 (48-133)||(14664903-14664988)
chr4 (48-133)||(24592612-24592697)
chr4 (45-133)||(14763605-14763693)
chr4 (45-133)||(24112547-24112635)
chr4 (45-133)||(34189258-34189346)
chr4 (48-130)||(6569738-6569820)
chr4 (48-85)||(18800971-18801008)
chr4 (45-85)||(19373143-19373183)
[»] scaffold0109 (1 HSPs)
scaffold0109 (1-203)||(21390-21592)
[»] chr2 (29 HSPs)
chr2 (7-150)||(27392818-27392961)
chr2 (41-203)||(19456635-19456800)
chr2 (6-203)||(31891542-31891742)
chr2 (6-202)||(27118515-27118714)
chr2 (6-203)||(34156838-34157038)
chr2 (6-203)||(34303517-34303717)
chr2 (6-203)||(3784481-3784681)
chr2 (6-203)||(16163426-16163626)
chr2 (44-203)||(21703378-21703540)
chr2 (48-130)||(11635482-11635564)
chr2 (48-130)||(11641671-11641753)
chr2 (48-133)||(32049664-32049749)
chr2 (48-130)||(261058-261140)
chr2 (21-130)||(12586640-12586749)
chr2 (45-133)||(27434734-27434822)
chr2 (48-130)||(21677475-21677557)
chr2 (48-130)||(27803558-27803640)
chr2 (48-133)||(12655408-12655493)
chr2 (48-133)||(20837784-20837869)
chr2 (48-133)||(23128856-23128941)
chr2 (48-133)||(28882080-28882165)
chr2 (48-133)||(34279315-34279400)
chr2 (45-130)||(40233362-40233447)
chr2 (171-203)||(27392964-27392996)
chr2 (48-130)||(13936837-13936919)
chr2 (48-130)||(27777073-27777155)
chr2 (48-130)||(27816840-27816922)
chr2 (48-85)||(12716943-12716980)
chr2 (45-130)||(39052121-39052206)
[»] chr1 (4 HSPs)
chr1 (3-203)||(16208256-16208456)
chr1 (6-203)||(20340560-20340760)
chr1 (3-150)||(20460932-20461079)
chr1 (48-132)||(41793610-41793694)
[»] chr6 (24 HSPs)
chr6 (45-202)||(20160568-20160728)
chr6 (45-202)||(22172103-22172263)
chr6 (6-203)||(28162485-28162685)
chr6 (6-203)||(8892478-8892678)
chr6 (6-203)||(13522241-13522441)
chr6 (6-203)||(33374424-33374624)
chr6 (6-203)||(8903713-8903913)
chr6 (48-133)||(26918247-26918332)
chr6 (45-203)||(22477441-22477605)
chr6 (48-130)||(3695930-3696012)
chr6 (48-133)||(26999940-27000025)
chr6 (48-130)||(34463608-34463690)
chr6 (48-133)||(13299195-13299280)
chr6 (48-133)||(15424561-15424646)
chr6 (45-130)||(16673991-16674076)
chr6 (48-133)||(16749721-16749806)
chr6 (96-133)||(22935121-22935158)
chr6 (96-133)||(23857566-23857603)
chr6 (48-133)||(26988868-26988953)
chr6 (48-172)||(4525156-4525280)
chr6 (45-133)||(29549342-29549430)
chr6 (48-133)||(24304862-24304947)
chr6 (48-133)||(24863584-24863669)
chr6 (48-85)||(26777919-26777956)
[»] scaffold0260 (1 HSPs)
scaffold0260 (6-203)||(2883-3083)
[»] chr7 (18 HSPs)
chr7 (3-203)||(16450109-16450312)
chr7 (6-203)||(31088575-31088775)
chr7 (6-203)||(45733292-45733492)
chr7 (44-203)||(16041193-16041355)
chr7 (48-133)||(5127863-5127948)
chr7 (45-130)||(5147530-5147615)
chr7 (45-130)||(26435125-26435210)
chr7 (45-133)||(16503567-16503655)
chr7 (45-133)||(16518603-16518691)
chr7 (36-130)||(3445153-3445247)
chr7 (48-130)||(11441431-11441513)
chr7 (48-130)||(45387214-45387296)
chr7 (48-163)||(2154444-2154559)
chr7 (45-130)||(26485934-26486019)
chr7 (45-130)||(26538063-26538148)
chr7 (45-133)||(5159390-5159478)
chr7 (48-133)||(10917052-10917137)
chr7 (48-133)||(11424963-11425048)
[»] chr3 (35 HSPs)
chr3 (41-203)||(18530221-18530380)
chr3 (42-203)||(16626772-16626936)
chr3 (6-203)||(17994050-17994250)
chr3 (6-203)||(4625736-4625936)
chr3 (48-130)||(28116302-28116384)
chr3 (48-130)||(47023284-47023366)
chr3 (6-203)||(5652179-5652379)
chr3 (48-133)||(7996393-7996478)
chr3 (48-133)||(10642901-10642986)
chr3 (6-124)||(5713016-5713134)
chr3 (6-124)||(5723926-5724044)
chr3 (6-124)||(5757433-5757551)
chr3 (6-124)||(5768324-5768442)
chr3 (48-130)||(11110706-11110788)
chr3 (36-130)||(51781830-51781924)
chr3 (36-130)||(51796919-51797013)
chr3 (48-133)||(4721462-4721547)
chr3 (48-133)||(4796995-4797080)
chr3 (45-130)||(48465743-48465828)
chr3 (45-172)||(8211569-8211696)
chr3 (48-130)||(20577207-20577289)
chr3 (36-130)||(29665330-29665424)
chr3 (48-130)||(36997434-36997516)
chr3 (48-133)||(6192147-6192232)
chr3 (48-133)||(7073043-7073128)
chr3 (48-133)||(8295806-8295891)
chr3 (48-133)||(15741424-15741509)
chr3 (48-133)||(35880597-35880682)
chr3 (45-133)||(4893041-4893129)
chr3 (45-133)||(18277394-18277482)
chr3 (45-133)||(18292695-18292783)
chr3 (45-133)||(18307996-18308084)
chr3 (45-133)||(32438985-32439073)
chr3 (48-85)||(5466816-5466853)
chr3 (48-85)||(29149145-29149182)
[»] chr5 (26 HSPs)
chr5 (45-203)||(23892082-23892246)
chr5 (6-203)||(13184770-13184970)
chr5 (6-203)||(13440616-13440816)
chr5 (6-203)||(33877087-33877287)
chr5 (48-202)||(24969903-24970057)
chr5 (6-203)||(11325634-11325834)
chr5 (44-203)||(22888348-22888510)
chr5 (45-203)||(25198908-25199069)
chr5 (48-130)||(8665676-8665758)
chr5 (48-130)||(18500949-18501031)
chr5 (48-130)||(31431307-31431389)
chr5 (48-130)||(43078128-43078210)
chr5 (48-133)||(9548741-9548826)
chr5 (48-133)||(22999312-22999397)
chr5 (45-176)||(33292404-33292535)
chr5 (51-133)||(11549236-11549318)
chr5 (48-133)||(23718186-23718271)
chr5 (48-133)||(23752648-23752733)
chr5 (48-133)||(33777366-33777451)
chr5 (45-130)||(3789402-3789487)
chr5 (48-133)||(15658958-15659043)
chr5 (48-85)||(24681316-24681353)
chr5 (48-85)||(24723843-24723880)
chr5 (48-85)||(28649105-28649142)
chr5 (48-133)||(30934515-30934600)
chr5 (49-130)||(41674589-41674670)
[»] scaffold0143 (1 HSPs)
scaffold0143 (48-133)||(27162-27247)
[»] scaffold0124 (3 HSPs)
scaffold0124 (44-150)||(20278-20384)
scaffold0124 (48-133)||(30323-30408)
scaffold0124 (159-203)||(20375-20419)
[»] scaffold0029 (1 HSPs)
scaffold0029 (48-133)||(431-516)
[»] scaffold0089 (2 HSPs)
scaffold0089 (48-133)||(47286-47371)
scaffold0089 (96-133)||(40370-40407)
[»] scaffold0558 (1 HSPs)
scaffold0558 (165-203)||(253-291)
[»] scaffold0144 (1 HSPs)
scaffold0144 (48-130)||(26506-26588)
[»] scaffold0415 (1 HSPs)
scaffold0415 (48-124)||(5859-5936)
[»] scaffold0336 (1 HSPs)
scaffold0336 (48-133)||(8102-8187)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 22081264 - 22081062
Alignment:
Q  1 ccattaatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccggg 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22081264 ccatcaatgctgctcagctacctccgccgtatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccggg 22081165  T
Q  101 tcaacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaacagcagcagcaacaaaccagacctacctttcctccgata 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22081164 tcaacctcaggtacccgtcaatgccattgctcagcaaatgcagcaacagccgttggctcaacagcagcagcaacaaaccagacctacctttcctccgata 22081065  T
Q  201 cca 203  Q
    |||    
T  22081064 cca 22081062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 44562932 - 44563132
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | || | |||   |||||||||||||||||||||||| |||||||| ||||| ||||||||   |||||   |||| |    
T  44562932 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccat---cgggac 44563028  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| ||||||   | ||||| ||| || |||||||| |  ||||||||    |||||||||||| | |||||||||||||||| |||    
T  44563029 aacctcaggtacccgttaatgccgccgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctctgat 44563128  T
Q  200 acca 203  Q
    ||||    
T  44563129 acca 44563132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 9354453 - 9354653
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  9354453 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 9354549  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  9354550 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 9354649  T
Q  200 acca 203  Q
    ||||    
T  9354650 acca 9354653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 19659423 - 19659223
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | || | |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  19659423 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 19659327  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || ||||| || |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  19659326 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacaacctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 19659227  T
Q  200 acca 203  Q
    ||||    
T  19659226 acca 19659223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 19286332 - 19286459
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatacagc 144  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||   | | ||||| ||||||||||| || ||||||||||||||||| ||  |||| |    
T  19286332 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttaccaccgggccaacctcaggttcctgtcaatgccattgctcaacaggtacaac 19286431  T
Q  145 aacagccgctggctcaacagcagcagca 172  Q
    | || ||||  | |||||||||||||||    
T  19286432 atcaaccgccagttcaacagcagcagca 19286459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 19687971 - 19688053
Alignment:
Q  51 cagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| || ||||| ||||||||||| || |   | |||||||||||||| |||||||| ||||| ||||||||    
T  19687971 cagcatcctttctttccgccattctatcaccagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaattgctca 19688053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 16277424 - 16277509
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  16277424 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 16277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 27609250 - 27609165
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  27609250 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 27609165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 18710453 - 18710541
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| |||||||||||  |||||||    
T  18710453 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcccgtcaatgcagttgctca 18710541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 2137604 - 2137519
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| ||  |||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  2137604 tctcagcatcctttctttccgtcattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 2137519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 19518488 - 19518451
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagta 85  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  19518488 tctcagcatcctttcttcccgccattttatcatcagta 19518451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 8e-97; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 15391765 - 15391563
Alignment:
Q  1 ccattaatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccggg 100  Q
    |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15391765 ccatcaatgttgctcagctacctccgccgtatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccggg 15391666  T
Q  101 tcaacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaacagcagcagcaacaaaccagacctacctttcctccgata 200  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15391665 tcaacctcaggtacccatcaatgccattgctcagcaaatgcagcaacagccgctggctcaacaacagcagcaacaaaccagacctacctttcctccgata 15391566  T
Q  201 cca 203  Q
    |||    
T  15391565 cca 15391563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 14235956 - 14235750
Alignment:
Q  3 attaatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtc 102  Q
    ||||||||||||||| |||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || | | |  ||||||    
T  14235956 attaatgctgctcagttacctctgccgtaccagtatatgcaatactctcagcatcctttcttcccaccattctatcatcagtaccctctaccatcgggtc 14235857  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggct------caacagcagcagcaacaaaccagacctacctttcctcc 196  Q
    | ||  |||||||||| |||||||||||||||||||| || |||||||||| ||||      ||||||||||| |||||| | ||||||||||||||||     
T  14235856 acccataggtacccgttaatgccattgctcagcaaatgcaacaacagccgccggctcagcaacaacagcagcaacaacaagctagacctacctttcctct 14235757  T
Q  197 gatacca 203  Q
    |||||||    
T  14235756 gatacca 14235750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 15285318 - 15285153
Alignment:
Q  41 gcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaata 140  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||| | | |  |||||||||||||||| ||||| |||||||| | |||||||||     
T  15285318 gcaatactctcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaacctcaggtgcccgttaatgccatcgttcagcaaatg 15285219  T
Q  141 cagcaacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    || |||||||| |   ||   ||||| |||||||||||| | ||||||||||||||||||||||||    
T  15285218 caacaacagccaccaactcaacaacaacagcagcaacaagctagacctacctttcctccgatacca 15285153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 15227713 - 15227916
Alignment:
Q  3 attaatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgg 99  Q
    ||||||||||| ||| |||||||| | || | |||   |||||||||||||||||| ||||| |||||||| ||||| || |||||   |||||   |||    
T  15227713 attaatgctgcccagttacctccgtcgtacccgtatgcgcaatactctcagcatcccttctttccaccattctatcatcaatatcctttgccat---cgg 15227809  T
Q  100 gtcaacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctcc 196  Q
    ||||||||||||||||||| |||||  | | ||||||||| || |||||||| |  |||   ||||| |||||||||||| | |||||||||||||||||    
T  15227810 gtcaacctcaggtacccgttaatgctgtcgttcagcaaatgcaacaacagccaccagctcaacaacaacagcagcaacaagctagacctacctttcctcc 15227909  T
Q  197 gatacca 203  Q
    |||||||    
T  15227910 gatacca 15227916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 1900141 - 1900303
Alignment:
Q  44 atactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaata 140  Q
    ||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   |||||||||||||||||||||| |||||| | | |||||||||     
T  1900141 atactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtcaacctcaggtacccgttaatgccgtcgttcagcaaatg 1900237  T
Q  141 cagcaacagccgctggctcaacag---cagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    || |||||||| |  | |||||||   || || |||||| | ||||||||||||||||||||||||    
T  1900238 caacaacagccaccagttcaacagcaacaacatcaacaagctagacctacctttcctccgatacca 1900303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 24461030 - 24460830
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| |||||| |   |||||||   ||||    
T  24461030 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtattctttgccatcg---ggtc 24460934  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  24460933 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 24460834  T
Q  200 acca 203  Q
    ||||    
T  24460833 acca 24460830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 54833272 - 54833399
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatacagc 144  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||   | | ||||| ||||||||||| || ||||||||||||||||| ||  |||| |    
T  54833272 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttaccaccgggccaacctcaggttcctgtcaatgccattgctcaacaggtacaac 54833371  T
Q  145 aacagccgctggctcaacagcagcagca 172  Q
    | || ||||  | |||||||||||||||    
T  54833372 atcaaccgccagttcaacagcagcagca 54833399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 5005755 - 5005837
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||||||||| ||||||||||| ||||| || |   | |||||||||||||| |||||||||||||| |||||    
T  5005755 tctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 5005837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 30753627 - 30753709
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||||||||| ||||||||||| ||||| || |   |||||||||||||||| || ||||||||||| |||||    
T  30753627 tctcagcatcctttcttcccgccattttatcatcagtaccctctgccgccgggtcaacctcaagtgcccgtcaatgcaattgc 30753709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 33674208 - 33674114
Alignment:
Q  36 tacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||  |||||||||||||| ||||||||||||||||| || ||||| || |   |||||||||||||||| || ||||||||||| |||||    
T  33674208 tacatgccgtactctcagcatccgttcttcccaccattttaccatcagtaccccctgccgccgggtcaacctcaagtgcccgtcaatgcaattgc 33674114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 27163703 - 27163618
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||||||||| ||||||||||| ||||| || |   | |||||||||||||| || ||||||||||| ||||||||    
T  27163703 tctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 27163618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 39850496 - 39850590
Alignment:
Q  36 tacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||  |||||||||||||| ||||||||||| ||||| || ||||| || |   |||||||||||||||| || ||||||||||| |||||    
T  39850496 tacatgccgtactctcagcatccgttcttcccaccgttttaccatcagtaccccctgccgccgggtcaacctcaagtgcccgtcaatgcaattgc 39850590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 17013885 - 17013970
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| ||||||||    
T  17013885 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaattgctca 17013970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 21969586 - 21969671
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||||||||| || |||||||| ||||| || |   | |||||||||||||| || ||||||||||| ||||||||    
T  21969586 tctcagcatcctttcttcccgccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 21969671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 14664903 - 14664988
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  14664903 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 14664988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 24592697 - 24592612
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  24592697 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 24592612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 14763693 - 14763605
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| |||||    
T  14763693 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctca 14763605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 24112547 - 24112635
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| |||||    
T  24112547 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggtccctgtcaatgccatcgctca 24112635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 34189346 - 34189258
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| |||||    
T  34189346 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggtccctgtcaatgccatcgctca 34189258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 6569738 - 6569820
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||| || |||||||| || ||||| || |   | |||||||||||||| |||||||| ||||| |||||    
T  6569738 tctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaattgc 6569820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 18801008 - 18800971
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagta 85  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  18801008 tctcagcatcctttcttcccgccattttatcatcagta 18800971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 19373143 - 19373183
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagta 85  Q
    |||||||||||||| ||||||||||| |||||||| |||||    
T  19373143 tactctcagcatccgttcttcccaccgttttatcatcagta 19373183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 21390 - 21592
Alignment:
Q  1 ccattaatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccggg 100  Q
    |||| |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  21390 ccatcaatgcttctcagctacctccgccgtaccagtacatgcaatactctcagcatcctttcttcccaccattctatcaccagtatccaccaccgccggg 21489  T
Q  101 tcaacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaacagcagcagcaacaaaccagacctacctttcctccgata 200  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  21490 tcaacctcaggtacccgtcaatgccattgctcagcaaatgcaacaacagctgctggcttaacagcagcaacaacaaaccagacctacctttcctccgata 21589  T
Q  201 cca 203  Q
    |||    
T  21590 cca 21592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 27392818 - 27392961
Alignment:
Q  7 atgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacc 106  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  27392818 atgctgctcagctacctccaccgtaccagtacatgcaatactctcagcatcctttcttcccaccattctatcaccagtatccgccaccgccgggtcaacc 27392917  T
Q  107 tcaggtacccgtcaatgccattgctcagcaaatacagcaacagc 150  Q
    ||||||||||||||||||||||||||||||||| || |||||||    
T  27392918 tcaggtacccgtcaatgccattgctcagcaaatgcaacaacagc 27392961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 19456800 - 19456635
Alignment:
Q  41 gcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaata 140  Q
    |||||||| ||||||||||||||| |||||||| ||||| |||||||| | | |  |||||||||||||||| ||||| |||||||| | | |||||||     
T  19456800 gcaatactttcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaacctcaggtgcccgttaatgccatcgtttagcaaatg 19456701  T
Q  141 cagcaacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    || |||||||| |  |||   ||||| |||||||||||| | ||||||||||||||||||||||||    
T  19456700 caacaacagccaccagctcaacaacaacagcagcaacaagctagacctacctttcctccgatacca 19456635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 31891742 - 31891542
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | || | |||   |||||||||||||||||||||||| |||||||| ||||| ||||||||   |||||   |||| |    
T  31891742 aatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccat---cgggac 31891646  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | | ||||| ||| || |||||||| |  ||||||||    |||||||||||| | |||||||||||||||| |||    
T  31891645 aacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctctgat 31891546  T
Q  200 acca 203  Q
    ||||    
T  31891545 acca 31891542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 27118515 - 27118714
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | || | | |   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  27118515 aatgctgctcagctacctccgtcgtacccgcatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 27118611  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | | ||||| ||| || |||||||| |  ||||||||    |||||||||||| | ||||||||||| ||||||||    
T  27118612 aacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctaccttccctccgat 27118711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 34156838 - 34157038
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  34156838 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 34156934  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  34156935 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 34157034  T
Q  200 acca 203  Q
    ||||    
T  34157035 acca 34157038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 34303717 - 34303517
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  34303717 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 34303621  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||| | | |  |||| ||| || |||||||| |  ||||||||    |||||||||||| | |||||||||||||||| |||    
T  34303620 aacctcaggtacccgttaatgtcgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctctgat 34303521  T
Q  200 acca 203  Q
    ||||    
T  34303520 acca 34303517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 3784481 - 3784681
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  3784481 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 3784577  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    ||| |||||||  | |||||||||||||||| |||    
T  3784578 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagtagcaacaggctagacctacctttcctctgat 3784677  T
Q  200 acca 203  Q
    ||||    
T  3784678 acca 3784681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 16163426 - 16163626
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| |||||| |   |||||||   ||||    
T  16163426 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtattctttgccatcg---ggtc 16163522  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  16163523 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 16163622  T
Q  200 acca 203  Q
    ||||    
T  16163623 acca 16163626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 21703540 - 21703378
Alignment:
Q  44 atactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaata 140  Q
    ||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   |||||||||||||||||||||| |||||| | | ||| |||||     
T  21703540 atactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtcaacctcaggtacccgttaatgccgtcgttcaacaaatg 21703444  T
Q  141 cagcaacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    || |||||||| |  | |   ||||| ||||| |||||| | ||||||||||| ||||||||||||    
T  21703443 caacaacagccaccagttcaacaacaacagcatcaacaagctagacctaccttccctccgatacca 21703378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 11635564 - 11635482
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||||||||| ||||||||||| ||||| || |   | |||||||||||||| |||||||||||||| |||||    
T  11635564 tctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 11635482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 11641753 - 11641671
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||||||||| ||||||||||| ||||| || |   | |||||||||||||| |||||||||||||| |||||    
T  11641753 tctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 11641671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 32049664 - 32049749
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||||||||| ||||||||||| ||||| || |   | |||||||||||||| || ||||||||||| ||||||||    
T  32049664 tctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 32049749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 261140 - 261058
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| |||||||| ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  261140 tctcagcatcctttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 261058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 12586640 - 12586749
Alignment:
Q  21 cctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtca 120  Q
    |||||| ||||||  |||||||  || ||||||||||||||||||||||| ||||| || ||||| || |   | |||||||||||||| || |||||||    
T  12586640 cctccgtcatatccatacatgccgtattctcagcatcctttcttcccaccgttttaccatcagtaccccctgccaccgggtcaacctcaagtgcccgtca 12586739  T
Q  121 atgccattgc 130  Q
    |||| |||||    
T  12586740 atgcaattgc 12586749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 27434822 - 27434734
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||||||||| |||||||| ||||| ||||| ||     | |||||||||||||| |||||||| ||||| ||||||||    
T  27434822 tactctcagcatcctttctttccaccattctatcatcagtaccctttgccaccgggtcaacctcaagtacccgttaatgcaattgctca 27434734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 21677557 - 21677475
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  21677557 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcgattgc 21677475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 27803558 - 27803640
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| ||||| || ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  27803558 tctcagcatcctttcttcccaccgttttaccatcagtaccccctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 27803640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 12655408 - 12655493
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  12655408 tctcagcatcctttctttccgccattttatcatcagtaccccctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 12655493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 20837784 - 20837869
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  20837784 tctcagcatcctttctttccgccattttatcatcagtaccccctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 20837869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 23128941 - 23128856
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  23128941 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 23128856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 28882080 - 28882165
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  28882080 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 28882165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 34279315 - 34279400
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || |||||||| || ||||| || |   | |||||||||||||| || ||||||||||| ||||||||    
T  34279315 tctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 34279400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 40233362 - 40233447
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||| ||||||||||| ||||| || ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  40233362 tactctcagcatccgttcttcccaccgttttaccatcagtaccccctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 40233447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 27392964 - 27392996
Alignment:
Q  171 caacaaaccagacctacctttcctccgatacca 203  Q
    |||||||||||||||||||||||||||||||||    
T  27392964 caacaaaccagacctacctttcctccgatacca 27392996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 13936919 - 13936837
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||| || |||||||| || ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  13936919 tctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 13936837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 27777073 - 27777155
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| ||||| || ||||| || |   | || ||||||||||| || ||||||||||| |||||    
T  27777073 tctcagcatcctttcttcccaccgttttaccatcagtaccccctgccaccaggtcaacctcaagtgcccgtcaatgcaattgc 27777155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 27816840 - 27816922
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| ||||| || ||||| || |   | || ||||||||||| || ||||||||||| |||||    
T  27816840 tctcagcatcctttcttcccaccgttttaccatcagtaccccctgccaccaggtcaacctcaagtgcccgtcaatgcaattgc 27816922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 12716980 - 12716943
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagta 85  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  12716980 tctcagcatcctttcttcccgccattttatcatcagta 12716943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 39052206 - 39052121
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||| ||||||||||| ||||| || ||||| || |   | |||||||||||||| || |||||||| || |||||    
T  39052206 tactctcagcatccgttcttcccaccgttttaccatcagtaccccctgccaccgggtcaacctcaagtgcccgtcaacgcaattgc 39052121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 16208456 - 16208256
Alignment:
Q  3 attaatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtc 102  Q
    ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |  ||||||    
T  16208456 attaatgctgcccagttacctccgccgtatcagtacatgcaatactctcagcatcctttcttcccaccattctatcaccagtatccaccaccatcgggtc 16208357  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaacagcagcagcaacaaaccagacctacctttcctccgatacc 202  Q
    | |||||||||||| | |||||||| | ||||||||| || |||||||| |  | |||||| || || |||||| | |||||||||||||||||||||||    
T  16208356 agcctcaggtacccattaatgccatcgttcagcaaatgcaacaacagccaccagttcaacaacaacatcaacaagctagacctacctttcctccgatacc 16208257  T
Q  203 a 203  Q
    |    
T  16208256 a 16208256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 20340760 - 20340560
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | || | ||||  |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  20340760 aatgctgctcagctacctccgtcgtacccgtacgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 20340664  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgat 199  Q
    ||||||||||||||||||||||| | | ||| ||||| || |||||||| |  |||   ||||| ||||| || ||| | ||||||||||||||||||||    
T  20340663 aacctcaggtacccgtcaatgccgtcgttcaacaaatgcaacaacagcctccagctcaacaacaacagcatcagcaagctagacctacctttcctccgat 20340564  T
Q  200 acca 203  Q
    ||||    
T  20340563 acca 20340560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 20460932 - 20461079
Alignment:
Q  3 attaatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtc 102  Q
    ||||||||||| ||| |||||||||| || | |||   |||||||||||||||||||||||| |||||||| ||||| || ||||| | | |  ||||||    
T  20460932 attaatgctgcccagttacctccgccgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcaatatcctctaccatcgggtc 20461031  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagc 150  Q
    |||||||||||||||| |||||||| | ||||||||| || |||||||    
T  20461032 aacctcaggtacccgttaatgccatcgttcagcaaatgcaacaacagc 20461079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 41793694 - 41793610
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctc 132  Q
    ||||| |||||||||||||| ||||||||||| ||||| || |   | |||||||||||||| || ||||||||||| |||||||    
T  41793694 tctcaacatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctc 41793610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 20160568 - 20160728
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatacagc 144  Q
    |||||||| ||||||||||  ||||||||||| || |||||||| | | | ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  20160568 tactctcaacatcctttctatccaccattttaccatcagtatcctctaccaccgggtcaacctcaggtacccgttaatgccattgctcagcaaaaacagc 20160667  T
Q  145 aacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgatacc 202  Q
    ||||||| |  |||   ||||| || ||||||||||| |||||||||||||||||||||||    
T  20160668 aacagccaccagctcaacaacaacaacagcaacaaactagacctacctttcctccgatacc 20160728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 45 - 202
Target Start/End: Complemental strand, 22172263 - 22172103
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatacagc 144  Q
    |||||||| ||||||||||  ||||||||||| || |||||||| | | | ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  22172263 tactctcaacatcctttctatccaccattttaccatcagtatcctctaccaccgggtcaacctcaggtacccgttaatgccattgctcagcaaaaacagc 22172164  T
Q  145 aacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgatacc 202  Q
    ||||||| |  |||   ||||| || ||||||||||| |||||||||||||||||||||||    
T  22172163 aacagccaccagctcaacaacaacaacagcaacaaactagacctacctttcctccgatacc 22172103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 28162485 - 28162685
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||  | || | |||   |||||||||||||||||||||||| |||||||| ||||| ||||||||   |||||   |||| |    
T  28162485 aatgctgctcagctacctccatcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccat---cgggac 28162581  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | | ||||| ||| || |||||||| |  ||||||||    |||||||||||| | |||||||||||||||| |||    
T  28162582 aacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctctgat 28162681  T
Q  200 acca 203  Q
    ||||    
T  28162682 acca 28162685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 8892678 - 8892478
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| |||||| |   |||||||   ||||    
T  8892678 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattatatcatcagtattctttgccatcg---ggtc 8892582  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | | ||||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  8892581 aacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 8892482  T
Q  200 acca 203  Q
    ||||    
T  8892481 acca 8892478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 13522441 - 13522241
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  13522441 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 13522345  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  13522344 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 13522245  T
Q  200 acca 203  Q
    ||||    
T  13522244 acca 13522241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 33374624 - 33374424
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  33374624 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 33374528  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  33374527 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 33374428  T
Q  200 acca 203  Q
    ||||    
T  33374427 acca 33374424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 8903913 - 8903713
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||  ||||| |||||||| ||||| |||||| |   |||||||   ||||    
T  8903913 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatctcttctttccaccattctatcatcagtattctttgccatcg---ggtc 8903817  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | | ||||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  8903816 aacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 8903717  T
Q  200 acca 203  Q
    ||||    
T  8903716 acca 8903713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 26918247 - 26918332
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||||||||| ||||||||    
T  26918247 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgctca 26918332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 22477605 - 22477441
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatac 141  Q
    |||||||||||||| ||||| |||||||| |||||  |||||||   |||||   |||||||||||||||||||||| ||||| |||||||| ||||| |    
T  22477605 tactctcagcatcccttctttccaccattctatcattagtatcctttgccat---cgggtcaacctcaggtacccgttaatgcaattgctcaacaaatgc 22477509  T
Q  142 agcaacagccgctggctcaaca------gcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    | |||||| | | || ||||||       || ||||||||| | |||||||||||||||| |||||||    
T  22477508 aacaacagtcaccggttcaacaacaacgacaacagcaacaagctagacctacctttcctctgatacca 22477441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 3695930 - 3696012
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| |||||||| ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  3695930 tctcagcatcctttcttcccaccgttttatcatcagtaccccctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 3696012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 26999940 - 27000025
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| ||||||||    
T  26999940 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaattgctca 27000025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 34463690 - 34463608
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| ||||| || ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  34463690 tctcagcatcctttcttcccaccgttttaccatcagtaccccctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 34463608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 13299280 - 13299195
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  13299280 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 13299195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 15424646 - 15424561
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  15424646 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 15424561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 16673991 - 16674076
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||| ||||||||||| ||||| || ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  16673991 tactctcagcatccgttcttcccaccgttttaccatcagtaccccctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 16674076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 16749721 - 16749806
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  16749721 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 16749806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 22935158 - 22935121
Alignment:
Q  96 ccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  22935158 ccgggtcaacctcaggtacccgtcaatgcaattgctca 22935121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 23857603 - 23857566
Alignment:
Q  96 ccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  23857603 ccgggtcaacctcaggtacccgtcaatgcaattgctca 23857566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 26988868 - 26988953
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  26988868 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 26988953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 4525156 - 4525280
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatacagcaac 147  Q
    ||||||||||| ||||||||||| |||||||| ||||||||     | || || ||||||||||| || ||||||||||| ||||| ||  |||| || |    
T  4525156 tctcagcatccgttcttcccaccgttttatcatcagtatcctttgccaccaggccaacctcaggttcctgtcaatgccatcgctcaacaggtacaacatc 4525255  T
Q  148 agccgctggctcaacagcagcagca 172  Q
    | ||||  | |||||||||||||||    
T  4525256 aaccgccagttcaacagcagcagca 4525280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 29549342 - 29549430
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| |||||    
T  29549342 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctca 29549430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 24304947 - 24304862
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||| ||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  24304947 tctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 24304862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 24863584 - 24863669
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||| ||||| ||||| || | | | ||| ||||||| || |||||||| ||||| ||||||||    
T  24863584 tctcagcatcctttctttccgccattctatcatcagtaccctctaccaccgagtcaaccccaagtacccgttaatgcaattgctca 24863669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 26777956 - 26777919
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagta 85  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  26777956 tctcagcatcctttcttcccaccgttttatcatcagta 26777919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 3083 - 2883
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | || | ||||  |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  3083 aatgctgctcagctacctccgtcgtacccgtacgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 2987  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgat 199  Q
    ||||||||||||||||||||||| | | ||| ||||| || |||||||| |  |||   ||||| ||||| || ||| | ||||||||||||||||||||    
T  2986 aacctcaggtacccgtcaatgccgtcgttcaacaaatgcaacaacagcctccagctcaacaacaacagcatcagcaagctagacctacctttcctccgat 2887  T
Q  200 acca 203  Q
    ||||    
T  2886 acca 2883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 16450312 - 16450109
Alignment:
Q  3 attaatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgg 99  Q
    ||||||||||| ||| |||||||| | || | ||||  ||| |||||||||||||| ||||| |||||||||||||| ||||||||   |||||   |||    
T  16450312 attaatgctgcccagttacctccgtcgtacccgtacgcgcagtactctcagcatcccttctttccaccattttatcatcagtatcctttgccat---cgg 16450216  T
Q  100 gtcaacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaacag---cagcagcaacaaaccagacctacctttcctcc 196  Q
    ||||||||||||||||| | |||||| | | ||||||| | || |||||||| |  |||||||||   |||||||||||| | |||||||||||||||||    
T  16450215 gtcaacctcaggtacccattaatgccgtcgttcagcaagtgcaacaacagccaccagctcaacagcaacagcagcaacaagctagacctacctttcctcc 16450116  T
Q  197 gatacca 203  Q
    |||||||    
T  16450115 gatacca 16450109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 31088775 - 31088575
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  31088775 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 31088679  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  31088678 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 31088579  T
Q  200 acca 203  Q
    ||||    
T  31088578 acca 31088575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 45733292 - 45733492
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  45733292 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 45733388  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  45733389 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 45733488  T
Q  200 acca 203  Q
    ||||    
T  45733489 acca 45733492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 16041193 - 16041355
Alignment:
Q  44 atactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatacag 143  Q
    ||||||||||||||| ||||| |||||||| ||||| ||||||||    ||  |||||||||||||||||||||| ||| || | | ||||||||| ||     
T  16041193 atactctcagcatcccttctttccaccattctatcatcagtatcctttgtcatcgggtcaacctcaggtacccgttaattccgtcgttcagcaaatgcaa 16041292  T
Q  144 caacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    |||||||| |  | |   ||||| ||||| |||||| | ||||||||||| ||||||||||||    
T  16041293 caacagccaccagttcaacaacaacagcatcaacaagctagacctaccttccctccgatacca 16041355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 5127863 - 5127948
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| |||||||| |   | |||||||||||||| |||||||| ||||| ||||||||    
T  5127863 tctcagcatcctttctttccgccattttatcatcagtatcctctgccaccgggtcaacctcaagtacccgttaatgcaattgctca 5127948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 5147615 - 5147530
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||| ||||||||||| |||||||| ||||| || |   | |||||||||||||| |||||||||||||| |||||    
T  5147615 tactctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 5147530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 26435125 - 26435210
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||| ||||||||||| |||||||| ||||| || |   | |||||||||||||| |||||||||||||| |||||    
T  26435125 tactctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 26435210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 16503655 - 16503567
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||     | ||||||||||||||||||||||| ||||| ||||||||    
T  16503655 tactctcagcatcctttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgttaatgcaattgctca 16503567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 16518691 - 16518603
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||     | ||||||||||||||||||||||| ||||| ||||||||    
T  16518691 tactctcagcatcctttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgttaatgcaattgctca 16518603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 3445153 - 3445247
Alignment:
Q  36 tacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||  |||||||||||||| ||||||||||| ||||| || ||||| || |   |||||||||||||||| || ||||||||||| |||||    
T  3445153 tacatgccgtactctcagcatccgttcttcccaccgttttaccatcagtaccccctgccgccgggtcaacctcaagtgcccgtcaatgcaattgc 3445247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 11441431 - 11441513
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| |||||||| ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  11441431 tctcagcatcctttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 11441513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 45387214 - 45387296
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||||||||| ||||||||||| ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  45387214 tctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 45387296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 2154444 - 2154559
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatacagcaac 147  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| ||| |||| ||||| |||||||| || ||| | ||||    
T  2154444 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtatccgttaatgcaattgctcaacagataaaacaac 2154543  T
Q  148 agccgctggctcaaca 163  Q
    ||  ||||| ||||||    
T  2154544 agttgctggttcaaca 2154559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 26486019 - 26485934
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||| ||||||||||| ||||| || ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  26486019 tactctcagcatccgttcttcccaccgttttaccatcagtaccccctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 26485934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 26538148 - 26538063
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||| ||||||||||| ||||| || ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  26538148 tactctcagcatccgttcttcccaccgttttaccatcagtaccccctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 26538063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 5159390 - 5159478
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| |||||    
T  5159390 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggtccctgtcaatgccatcgctca 5159478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 10917137 - 10917052
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||| ||||| || ||||||||||| |||||||| |   | |||||||||||||| ||||| || ||||| || |||||    
T  10917137 tctcagcatcccttctttccgccattttatcatcagtatcctctgccaccgggtcaacctcaagtacctgttaatgcaatcgctca 10917052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 11425048 - 11424963
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || |||||||| || ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  11425048 tctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 11424963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 18530221 - 18530380
Alignment:
Q  41 gcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaata 140  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||| | | |  ||||||||||||| || ||||| |||||| | | |||||||||     
T  18530221 gcaatactctcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaacctcaagtgcccgttaatgccgtcgttcagcaaatg 18530320  T
Q  141 cagcaacagccgctggctcaacagcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    || |||||||| |  ||||||   |||||||||||| | ||||||||||||||||||||||||    
T  18530321 caacaacagccaccagctcaa---cagcagcaacaagctagacctacctttcctccgatacca 18530380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 16626936 - 16626772
Alignment:
Q  42 caatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatac 141  Q
    ||||||||||||||||| ||||| ||||| || ||||| |||||||| | | |  |||||||||||| ||||||||| |||||||| | ||||||||| |    
T  16626936 caatactctcagcatcccttctttccaccgttctatcatcagtatcctctaccatcgggtcaacctccggtacccgttaatgccatcgttcagcaaatgc 16626837  T
Q  142 agcaacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    | |||||||| |  |||   ||||| |||||||||||| | ||||||||||||||||||||||||    
T  16626836 aacaacagccaccagctcaacaacaacagcagcaacaagctagacctacctttcctccgatacca 16626772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 17994250 - 17994050
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  17994250 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 17994154  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  17994153 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 17994054  T
Q  200 acca 203  Q
    ||||    
T  17994053 acca 17994050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 4625736 - 4625936
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  4625736 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattatatcatcagtatcctttgccat---cgggtc 4625832  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||| | | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  4625833 aacctcaggtacccgttaatgtcgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 4625932  T
Q  200 acca 203  Q
    ||||    
T  4625933 acca 4625936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 28116384 - 28116302
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||||||||| ||||||||||| ||||| || |   | |||||||||||||| |||||||||||||| |||||    
T  28116384 tctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 28116302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 47023284 - 47023366
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| |||||||| ||||| || |   | ||||||||||||||||| ||||||||||| |||||    
T  47023284 tctcagcatcctttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaggtgcccgtcaatgcaattgc 47023366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 5652179 - 5652379
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| |||||||    || ||||   ||||    
T  5652179 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcgtttgcaatcg---ggtc 5652275  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  5652276 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 5652375  T
Q  200 acca 203  Q
    ||||    
T  5652376 acca 5652379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 7996393 - 7996478
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||||||||| ||||||||||| ||||| || |   | |||||||||||||| || ||||||||||| ||||||||    
T  7996393 tctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 7996478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 10642901 - 10642986
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||||||||| ||||||||||| ||||| || |   | |||||||||||||| || ||||||||||| ||||||||    
T  10642901 tctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 10642986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 5713016 - 5713134
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaac 105  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||| || |   | ||||||||||    
T  5713016 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccaccgggtcaac 5713115  T
Q  106 ctcaggtacccgtcaatgc 124  Q
    |||| || |||||||||||    
T  5713116 ctcaagtgcccgtcaatgc 5713134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 5723926 - 5724044
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaac 105  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||| || |   | ||||||||||    
T  5723926 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccaccgggtcaac 5724025  T
Q  106 ctcaggtacccgtcaatgc 124  Q
    |||| || |||||||||||    
T  5724026 ctcaagtgcccgtcaatgc 5724044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 5757551 - 5757433
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaac 105  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||| || |   | ||||||||||    
T  5757551 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccaccgggtcaac 5757452  T
Q  106 ctcaggtacccgtcaatgc 124  Q
    |||| || |||||||||||    
T  5757451 ctcaagtgcccgtcaatgc 5757433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 5768442 - 5768324
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaac 105  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||| || |   | ||||||||||    
T  5768442 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccaccgggtcaac 5768343  T
Q  106 ctcaggtacccgtcaatgc 124  Q
    |||| || |||||||||||    
T  5768342 ctcaagtgcccgtcaatgc 5768324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 11110788 - 11110706
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| |||||||| ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  11110788 tctcagcatcctttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 11110706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 51781830 - 51781924
Alignment:
Q  36 tacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||  |||||||||||||| ||||||||||| ||||| || ||||| || |   |||||||||||||||| || ||||||||||| |||||    
T  51781830 tacatgccgtactctcagcatccgttcttcccaccgttttaccatcagtaccccctgccgccgggtcaacctcaagtgcccgtcaatgcaattgc 51781924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 51796919 - 51797013
Alignment:
Q  36 tacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||  |||||||||||||| ||||||||||| ||||| || ||||| || |   |||||||||||||||| || ||||||||||| |||||    
T  51796919 tacatgccgtactctcagcatccgttcttcccaccgttttaccatcagtaccccctgccgccgggtcaacctcaagtgcccgtcaatgcaattgc 51797013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 4721462 - 4721547
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||| |||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||||||||| ||||||||    
T  4721462 tctcagcatcttttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgctca 4721547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 4797080 - 4796995
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| ||||||||    
T  4797080 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaattgctca 4796995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 48465743 - 48465828
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||| ||||||||||| ||||| || ||||| || ||  | |||||||||||||| || ||||||||||| |||||    
T  48465743 tactctcagcatccgttcttcccaccgttttaccatcagtaccccccgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 48465828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 8211569 - 8211696
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatacagc 144  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| ||||| ||  |||| |    
T  8211569 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctcaacaggtacaac 8211668  T
Q  145 aacagccgctggctcaacagcagcagca 172  Q
    | || ||||  | |||||||||||||||    
T  8211669 atcaaccgccagttcaacagcagcagca 8211696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 20577289 - 20577207
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| ||||| || ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  20577289 tctcagcatcctttcttcccaccgttttaccatcagtaccccctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 20577207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 29665424 - 29665330
Alignment:
Q  36 tacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||  |||||||||||||| ||||||||||| |||||||| ||||| ||     | |||||||||||||| || ||||||||||| |||||    
T  29665424 tacatgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 29665330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 36997516 - 36997434
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| |||||||| ||||| || |   | || || ||||||||||| ||||||||||| |||||    
T  36997516 tctcagcatcctttcttcccaccgttttatcatcagtaccctctgccacccggccaacctcaggtgcccgtcaatgcaattgc 36997434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 6192147 - 6192232
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||||||  | |||||||||||  |||| || |   | |||||||||||||| |||||||||||||| ||||||||    
T  6192147 tctcagcatcctttcttttcgccattttatcattagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgctca 6192232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 7073043 - 7073128
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || |||||||| || ||||| || |   | |||||||||||||| || ||||||||||| ||||||||    
T  7073043 tctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 7073128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 8295806 - 8295891
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |  || |||||||||||||| ||||| || ||||| || |||||    
T  8295806 tctcagcatcctttctttccgccattttatcatcagtaccctctgtcaccgggtcaacctcaagtacctgttaatgcaatcgctca 8295891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 15741509 - 15741424
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  15741509 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 15741424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 35880597 - 35880682
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  35880597 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 35880682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 4893041 - 4893129
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| |||||    
T  4893041 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggtccctgtcaatgccatcgctca 4893129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 18277482 - 18277394
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| |||||    
T  18277482 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctca 18277394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 18292783 - 18292695
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| |||||    
T  18292783 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctca 18292695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 18308084 - 18307996
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| |||||    
T  18308084 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctca 18307996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 32438985 - 32439073
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| |||||    
T  32438985 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggtccctgtcaatgccatcgctca 32439073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 5466816 - 5466853
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagta 85  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  5466816 tctcagcatccgttcttcccaccattttatcatcagta 5466853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 29149182 - 29149145
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagta 85  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  29149182 tctcagcatcctttcttcccaccgttttatcatcagta 29149145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 23892082 - 23892246
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatac 141  Q
    |||||||||||||||||||| ||| |||| ||||| ||||||||   |||||   ||||||||||||||||||||||||||||||| | ||||||||| |    
T  23892082 tactctcagcatcctttctttccaacattctatcatcagtatcctttgccat---cgggtcaacctcaggtacccgtcaatgccatcgttcagcaaatgc 23892178  T
Q  142 agcaacagccgctggct------caacagcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    | |||||||| | || |      ||||| || || |||||| | ||||||||||||||||||||||||    
T  23892179 aacaacagccaccggttcaacaacaacaacaacatcaacaagctagacctacctttcctccgatacca 23892246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 13184970 - 13184770
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  13184970 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 13184874  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  13184873 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 13184774  T
Q  200 acca 203  Q
    ||||    
T  13184773 acca 13184770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 13440816 - 13440616
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  13440816 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 13440720  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  13440719 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 13440620  T
Q  200 acca 203  Q
    ||||    
T  13440619 acca 13440616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 33877087 - 33877287
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||    
T  33877087 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtc 33877183  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | |  |||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  33877184 aacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 33877283  T
Q  200 acca 203  Q
    ||||    
T  33877284 acca 33877287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 24969903 - 24970057
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatacagcaac 147  Q
    ||||||||||||||||| || ||||| ||||| ||||||||     | ||||||||||||||||||||||| ||||| |||||||| || ||  | ||||    
T  24969903 tctcagcatcctttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgttaatgcaattgctcaacagatgaaacaac 24970002  T
Q  148 agccgctggctcaacagcagcagcaacaaaccagacctacctttcctccgatacc 202  Q
    ||| || || |||||| || || |||||| | |||||||| || |||||||||||    
T  24970003 agctgccggttcaacaacaacatcaacaagctagacctactttccctccgatacc 24970057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 11325634 - 11325834
Alignment:
Q  6 aatgctgctcagctacctccgccatatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtc 102  Q
    ||||||||||||||||||||| | ||   |||   |||||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||    ||| |    
T  11325634 aatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---tgggac 11325730  T
Q  103 aacctcaggtacccgtcaatgccattgctcagcaaatacagcaacagccgctggctcaaca---gcagcagcaacaaaccagacctacctttcctccgat 199  Q
    |||||||||||||||| |||||| | | ||||| ||| || |||||||| |  ||||||||    |||||||||||  | |||||||||||||||| |||    
T  11325731 aacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcctctgat 11325830  T
Q  200 acca 203  Q
    ||||    
T  11325831 acca 11325834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 22888348 - 22888510
Alignment:
Q  44 atactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaata 140  Q
    ||||||||||||||| ||||| |||||||| ||||| ||||||||   |||||   ||||||||||||||||| |||| |||||| | | |||||||||     
T  22888348 atactctcagcatcccttctttccaccattctatcatcagtatcctttgccat---cgggtcaacctcaggtaaccgttaatgccgtcgttcagcaaatg 22888444  T
Q  141 cagcaacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    || |||||||| |  | |   ||||| ||||| |||||| | ||||||||||| ||||||||||||    
T  22888445 caacaacagccaccagttcaacaacaacagcatcaacaagctagacctaccttccctccgatacca 22888510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 25198908 - 25199069
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatac 141  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||   |||||   |||||||||||||||||| ||| || ||| | | ||||||||| |    
T  25198908 tactctcagcatcctttctttccaccattctatcatcagtatcctttgccat---cgggtcaacctcaggtactcgttaacgccgtcgttcagcaaatgc 25199004  T
Q  142 agcaacagccgctggct---caacagcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    | |||||||| |  | |   ||||| ||||| |||||| | |||||||||||| |||||||||||    
T  25199005 aacaacagccaccagttcaacaacaacagcatcaacaagctagacctaccttttctccgatacca 25199069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 8665758 - 8665676
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||| || ||||||||||| ||||| || |  || |||||||||||||| || ||||||||||| |||||    
T  8665758 tctcagcatcctttctttccgccattttatcatcagtaccctctgtcaccgggtcaacctcaagtgcccgtcaatgcgattgc 8665676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 18501031 - 18500949
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| |||||||| ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  18501031 tctcagcatcctttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 18500949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 31431307 - 31431389
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||| ||||||||||| |||||||| ||||| || |   | |||||||||||||| |||||||||||||| |||||    
T  31431307 tctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgc 31431389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 43078128 - 43078210
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||||||||||||||| |||||||| ||||| || |   | |||||||||||||| || ||||||||||| |||||    
T  43078128 tctcagcatcctttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 43078210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 9548826 - 9548741
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || |||||||| || ||||| || |   | |||||||||||||| |||||||||||||| ||||||||    
T  9548826 tctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgtcaatgcaattgctca 9548741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 22999397 - 22999312
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   |||||||||||||||| |||||||| ||||| || |||||    
T  22999397 tctcagcatcctttctttccgccattttatcatcagtaccctctgccgccgggtcaacctcaagtacccgttaatgcaatcgctca 22999312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 33292404 - 33292535
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaatacagc 144  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| ||||||||||| || ||||||||||| ||||| ||  | || |    
T  33292404 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggtccctgtcaatgccatcgctcaacaggtgcaac 33292503  T
Q  145 aacagccgctggctcaacagcagcagcaacaa 176  Q
    | || ||||  | |||||||||||||||||||    
T  33292504 atcaaccgccagttcaacagcagcagcaacaa 33292535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 11549236 - 11549318
Alignment:
Q  51 cagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    |||||||||||||| |||||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  11549236 cagcatcctttctttccaccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 11549318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 23718271 - 23718186
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  23718271 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 23718186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 23752733 - 23752648
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  23752733 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 23752648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 33777366 - 33777451
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  33777366 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 33777451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 3789402 - 3789487
Alignment:
Q  45 tactctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||| ||||||||||| |||||||| ||||| ||     | ||||| || |||||||| ||||||||||| |||||    
T  3789402 tactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccagcctcaggtgcccgtcaatgcaattgc 3789487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 15659043 - 15658958
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || || ||||| || ||||| || |   | |||||||||||||| || ||||||||||| ||||||||    
T  15659043 tctcagcatcctttctttccgccgttttaccatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 15658958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 24681316 - 24681353
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagta 85  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  24681316 tctcagcatcctttcttcccgccattttatcatcagta 24681353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 24723843 - 24723880
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagta 85  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  24723843 tctcagcatcctttcttcccgccattttatcatcagta 24723880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 28649105 - 28649142
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagta 85  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  28649105 tctcagcatcctttcttcccgccattttatcatcagta 28649142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 30934515 - 30934600
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||| ||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  30934515 tctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 30934600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 41674589 - 41674670
Alignment:
Q  49 ctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    |||||||||||||||| || |||||||| || ||||| || |   | ||||||| |||||| |||||||||||||| |||||    
T  41674589 ctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtccacctcaagtacccgtcaatgcaattgc 41674670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 27162 - 27247
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || | | | |||||||||||||| |||||||| ||||| || |||||    
T  27162 tctcagcatcctttctttccgccattttatcatcagtaccctctaccaccgggtcaacctcaagtacccgttaatgcaatcgctca 27247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 150
Target Start/End: Original strand, 20278 - 20384
Alignment:
Q  44 atactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccgggtcaacctcaggtacccgtcaatgccattgctcagcaaata 140  Q
    ||||||||||||||| ||||| ||| |||| ||||| ||||||||   |||||   |||||||||||||||||||||| |||||| | | |||||||||     
T  20278 atactctcagcatcccttctttccatcattctatcatcagtatcctttgccat---cgggtcaacctcaggtacccgttaatgccgtcgttcagcaaatg 20374  T
Q  141 cagcaacagc 150  Q
    || |||||||    
T  20375 caacaacagc 20384  T

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Target: scaffold0124; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 30323 - 30408
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||| ||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  30323 tctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 30408  T

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Target: scaffold0124; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 20375 - 20419
Alignment:
Q  159 caacagcagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    ||||| |||||||||||| | |||||||||||||| |||||||||    
T  20375 caacaacagcagcaacaagctagacctacctttcccccgatacca 20419  T

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Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 516 - 431
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| ||||||||    
T  516 tctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaatgcaattgctca 431  T

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Target: scaffold0089 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 47371 - 47286
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||| || ||||||||||| ||||| || |   | |||||||||||||| |||||||| ||||| || |||||    
T  47371 tctcagcatcctttctttccgccattttatcatcagtaccccctgccaccgggtcaacctcaagtacccgttaatgcaatcgctca 47286  T

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Target: scaffold0089; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 40407 - 40370
Alignment:
Q  96 ccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  40407 ccgggtcaacctcaggtacccgtaaatgcaattgctca 40370  T

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Target: scaffold0558 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0558
Description:

Target: scaffold0558; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 291 - 253
Alignment:
Q  165 cagcagcaacaaaccagacctacctttcctccgatacca 203  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  291 cagcagcaacaagctagacctacctttcctccgatacca 253  T

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Target: scaffold0144 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 26588 - 26506
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgc 130  Q
    ||||||||||| ||||||||||| |||||||| ||||| |||    ||||||| || ||||| || ||||||||||| |||||    
T  26588 tctcagcatccgttcttcccaccgttttatcatcagtacccgttgccgccgggccagcctcaagtgcccgtcaatgcaattgc 26506  T

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Target: scaffold0415 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0415
Description:

Target: scaffold0415; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 5859 - 5936
Alignment:
Q  48 tctcagcatcctttcttcccacc-attttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgc 124  Q
    |||||||||||||||||||||||  |||||||| ||||| || |   | |||||||||||||| || |||||||||||    
T  5859 tctcagcatcctttcttcccaccgtttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgc 5936  T

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Target: scaffold0336 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 8102 - 8187
Alignment:
Q  48 tctcagcatcctttcttcccaccattttatcaccagtatccgccatcgccgggtcaacctcaggtacccgtcaatgccattgctca 133  Q
    ||||||||||| ||||||||||| |||||||| ||||||||     | || || ||||||||||| || ||||||||||| |||||    
T  8102 tctcagcatccgttcttcccaccgttttatcatcagtatcctttgccaccaggccaacctcaggttcctgtcaatgccatcgctca 8187  T

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