View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_7 (Length: 532)
Name: NF8581_low_7
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 4311203 - 4311717
Alignment:
| Q |
18 |
ctattccaattccaataaccgtcaccatgcctaaaatgaagcaactccttcgaaagcttcatatcggtggtggcgctcctacttctccaatcaacaatca |
117 |
Q |
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| T |
4311203 |
ctattccaattccaataaccgtcaccatgcctaaaatgaagcaactccttcgaaagcttcatatcggtggtggcgctcctacttctccaatcaacaatca |
4311302 |
T |
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| Q |
118 |
caatacaatcgca------------aacgcaaacgtagcattgccactttctcactccgattctctcactacaactccttctccttcgccatctccttct |
205 |
Q |
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| T |
4311303 |
caatacaatcgcaaacgcaaacgcaaacgcaaacgtagcattgccactttctcactccgattctctcactacaactccttctccttcgccatctccttct |
4311402 |
T |
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| Q |
206 |
ccgtctccgacggttgttcagaatccgcgaaacgacggcgccggtgtgaacgactttaatctgttacaggaagaagagtttcaggttcaattagcgcttg |
305 |
Q |
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| T |
4311403 |
ccgtctccgacggttgttcagaatccgcgaaacgacggcgccggtgtgaacgactttaatctgttacaggaagaagagtttcaggttcaattagcgcttg |
4311502 |
T |
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| Q |
306 |
cgattagtgcttctgattccgatccgaaggatgttgatgaatctgctcagatcgatgctgctaaacagatcagccttggctattctgcttctcttacgga |
405 |
Q |
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| T |
4311503 |
cgattagtgcttctgattccgatccgaaggatgttgatgaatctgctcagatcgatgctgctaaacagatcagccttggctattctgcttctcttacgga |
4311602 |
T |
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| Q |
406 |
tactcctgcacttgttcagtttcaatcgcttcgttattgggtaatattattgttgttaatttgaagtgtaattggagttagggtagtcaaattatgtgtt |
505 |
Q |
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| T |
4311603 |
tactcctgcacttgttcagtttcaatcgcttcgttattgggtaatattattgttgttaatttgaagtgtaattggagttagggtagtcaaattatgtgtt |
4311702 |
T |
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| Q |
506 |
atgtctttgtttctt |
520 |
Q |
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| T |
4311703 |
atgtgtttgtttctt |
4311717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 43296651 - 43296600
Alignment:
| Q |
133 |
cgcaaacgtagcattgccactttctcactccgattctctcactacaactcct |
184 |
Q |
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| T |
43296651 |
cgcaaacgcatcattaccattttctcactccgattctctcactacaactcct |
43296600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 43296741 - 43296678
Alignment:
| Q |
26 |
attccaataaccgtcaccatgcctaaaatgaagcaactccttcgaaagcttcatatcggtggtgg |
90 |
Q |
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| T |
43296741 |
attccaataaccgtcacaa-gctttaaatgaagcaactccttcgtaagcttcacataggtggtgg |
43296678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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