View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8581_low_8 (Length: 490)
Name: NF8581_low_8
Description: NF8581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8581_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Complemental strand, 45560104 - 45559643
Alignment:
| Q |
16 |
cagttgagtacagttcccaatggatgatggaattataccagagaattggttagtatcgagatacaagtagcgaagttgagtgatgttggcaatagtagtt |
115 |
Q |
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| T |
45560104 |
cagttgagtacagttcccaatggatgatggaattataccagagaattggttagtatcgagatacaagtagcgaagttgagtgatgttggcaatagtagtt |
45560005 |
T |
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| Q |
116 |
ggaatggaaccagtaagttggttaaaatagggatcaagaaagtgaaggtgagggatttgagttaagaaatagggaaatggaccagtgagtagattagtag |
215 |
Q |
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| T |
45560004 |
ggaatggaaccagtaagttggttgaaatagagatcaagaaagtgaaggtgagggatttgagttaagaaatagggaaatggaccagtgagtagattagtag |
45559905 |
T |
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| Q |
216 |
aaaggctgagataggtgagtttgtggaggttagagaatgagtgaggtatttggccggtaaagtaattagaagaaaggtctaaatagttgaggtgtgtgca |
315 |
Q |
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| T |
45559904 |
aaaggctgagataggtgagtttgtggaggttagagaatgagtgaggtatttgaccggtaaagtaattagaagaaaggtctaagtagttgaggtgtgtgca |
45559805 |
T |
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| Q |
316 |
attagaaatttcaggtcgtaatggagcatgaatgttaaaagaggaaaggttgagagagactacacggtgagtggaagggttgcatttgacacccttccat |
415 |
Q |
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| T |
45559804 |
attagaaatttcaggtcgtaatggagcatgaatgttacaagaggaaaggttgagagagactacacggtgagtggaagggttgcatttgacacccttccat |
45559705 |
T |
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| Q |
416 |
gagcatggtgttgaatgagatggaatccatgttgagtttatggaaggaggaactgatgtcca |
477 |
Q |
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| T |
45559704 |
gagcatggtgttgaatgagatggaatccatgttgagtttatggaaggaggaactgatgtcca |
45559643 |
T |
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