View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8582_high_1 (Length: 712)

Name: NF8582_high_1
Description: NF8582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8582_high_1
NF8582_high_1
[»] chr5 (4 HSPs)
chr5 (1-696)||(36849334-36850029)
chr5 (587-694)||(36860991-36861098)
chr5 (326-421)||(4384039-4384134)
chr5 (326-380)||(3004390-3004444)
[»] chr6 (11 HSPs)
chr6 (4-147)||(6620059-6620202)
chr6 (393-566)||(6618626-6618798)
chr6 (388-566)||(6619757-6619935)
chr6 (9-136)||(6618354-6618480)
chr6 (453-566)||(6678273-6678386)
chr6 (221-318)||(6619963-6620063)
chr6 (221-318)||(6618493-6618593)
chr6 (320-380)||(6781282-6781342)
chr6 (320-379)||(6666905-6666964)
chr6 (444-538)||(6666975-6667069)
chr6 (117-172)||(6666585-6666637)
[»] chr3 (7 HSPs)
chr3 (320-566)||(46520370-46520616)
chr3 (353-566)||(49879621-49879834)
chr3 (140-218)||(49879507-49879585)
chr3 (326-419)||(46520175-46520268)
chr3 (607-696)||(49879993-49880082)
chr3 (132-184)||(46520161-46520213)
chr3 (656-697)||(46520769-46520810)
[»] chr1 (1 HSPs)
chr1 (326-566)||(18134169-18134409)
[»] chr4 (2 HSPs)
chr4 (326-380)||(54654437-54654491)
chr4 (484-534)||(54654541-54654591)
[»] chr2 (3 HSPs)
chr2 (124-185)||(16230898-16230959)
chr2 (93-184)||(34688631-34688719)
chr2 (93-184)||(34711043-34711131)


Alignment Details
Target: chr5 (Bit Score: 680; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 1 - 696
Target Start/End: Complemental strand, 36850029 - 36849334
Alignment:
Q  1 atgtctctttagttaacgatgcaagtcacgatcaaccaattcacgagatgattccctcgaaaggcttacaggctagccaaatatcagtgggaatcgacag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36850029 atgtctctttagttaacgatgcaagtcacgatcaaccaattcacgagatgattccctcgaaaggcttacaggctagccaaatatcagtgggaatcgacag 36849930  T
Q  101 tatgcctactctcgagaaggatgttattattattgatgctgatgatggtgaagaggacatacaaggcagaactgcattcaaccagaagggggtaaatact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36849929 tatgcctactctcgagaaggatgttattattattgatgctgatgatgatgaagaggacatacaaggcagaactgcattcaaccagaagggggtaaatact 36849830  T
Q  201 aacagagaacttattattattgatgatgatggtgaagaggagaaagatcttggaagacatgacattgtagacaacatttccatggaaatggacattggag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36849829 aacagagaacttattattattgatgatgatggtgaagaggagaaagatcttggaagacatgacattgtagacaacatttccatggaaatggacattggag 36849730  T
Q  301 caaattccaatatgcatgctcctattgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgctcaaaaggaagtcagtgagcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36849729 caaattccaatatgcatgctcctattgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgctcaaaaggaagtcagtgagcc 36849630  T
Q  401 aaaagctgaacaagagaagcacacaaaatccactaagagaataaatgatgctgtttccttgattgattcattcacatggaagcaaataacagaacatgtt 500  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36849629 aaaagctgaacaagagaagcaaacaaaatccactaagagaataaatgatgctgtttccttgattgattcattcagatggaagcaaataacagaacatgtt 36849530  T
Q  501 agtagtctgagaaaggaatctgttcaggttagtacacctccctttagtgttttcaattaccttgatgcggttaagctatttagagtattttgtgtgtatc 600  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36849529 agtagtctgagaaaggaatctgttcaggttagtacacctccatttagtgttttcaattaccttgatgcggttaagctatttagagtattttgtgtgtatc 36849430  T
Q  601 gtgaaccagctgacagattgtatttatatttgtcagtatctgcaaaaatacaaataaattgtttttagtttgtgatttttattgaaatttcatttt 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36849429 gtgaaccagctgacagattgtatttatatttgtcagtatctgcaaaaatacaaataaattgtttttagtttgtgatttttattgaaatttcatttt 36849334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 587 - 694
Target Start/End: Complemental strand, 36861098 - 36860991
Alignment:
Q  587 attttgtgtgtatcgtgaaccagctgacagattgtatttatatttgtcagtatctgcaaaaatacaaataaattgtttttagtttgtgatttttattgaa 686  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||  ||||||||| ||    
T  36861098 attttgtgtttatcatgaaccagctgacagattgtatttatatttgtcaatatctgcaaaaatacaaataaattatttttagtttgcaatttttattaaa 36860999  T
Q  687 atttcatt 694  Q
    ||||||||    
T  36860998 atttcatt 36860991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 326 - 421
Target Start/End: Original strand, 4384039 - 4384134
Alignment:
Q  326 tgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgctcaaaaggaagtcagtgagccaaaagctgaacaagagaagca 421  Q
    ||||| ||| |||| ||||||  ||||||| ||||||||| |||||| ||||||| |||||||| ||  ||||||||||| ||| |||||||||||    
T  4384039 tgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagca 4384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 3004390 - 3004444
Alignment:
Q  326 tgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgct 380  Q
    |||| ||||| |||||||||| || |||| |||||||||||| ||||||||||||    
T  3004390 tgatatagagcacaaacaagatgggattgaattcaaccaggacgggacagatgct 3004444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 6620202 - 6620059
Alignment:
Q  4 tctctttagttaacgatgcaagtcacgatcaaccaattcacgagatgattccctcgaaaggcttacaggctagccaaatatcagtgggaatcgacagtat 103  Q
    |||||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  6620202 tctctttagttaacaatgcaagttacgatcaactaattaacaagatgattccctcgaaaggcttacaggctagccaaatatcagtaggaatcaacagtat 6620103  T
Q  104 gcctactctcgagaaggatgttattattattgatgctgatgatg 147  Q
    || |||||||||  ||||||| |||||||||||||  |||||||    
T  6620102 gcttactctcgaagaggatgtgattattattgatgacgatgatg 6620059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 393 - 566
Target Start/End: Original strand, 6618626 - 6618798
Alignment:
Q  393 agtgagccaaaagctgaacaagagaagcacacaaaatccactaagagaataaatgatgctgtttccttgattgattcattcacatggaagcaaataacag 492  Q
    ||||||||||||  | | |||||||||||| |||||||| ||||  ||||||||| || |||||||||||||||||||||||||||  | ||||||| |     
T  6618626 agtgagccaaaatataatcaagagaagcacccaaaatcctctaatggaataaatgttgttgtttccttgattgattcattcacatgtgaccaaataaaac 6618725  T
Q  493 aacatgttagtagtctgagaaaggaatctgttcaggttagtacacctccctttagtgttttcaattaccttgat 566  Q
    |||||  || | |||||||||| |||||||||||||||||||| || || ||| ||||||||||||||| ||||    
T  6618726 aacat-atacttgtctgagaaaagaatctgttcaggttagtaccccaccttttggtgttttcaattaccctgat 6618798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 388 - 566
Target Start/End: Complemental strand, 6619935 - 6619757
Alignment:
Q  388 aagtcagtgagccaaaagctgaacaagagaagcacacaaaatccactaagagaataaatgatgctgtttccttgattgattcattcacatggaagcaaat 487  Q
    |||| ||||||| ||||  ||| |||||||||||| |||||||| ||||  ||||||||| || ||||||||||||||||||||||||| |  | |||||    
T  6619935 aagttagtgagctaaaatatgatcaagagaagcactcaaaatcctctaatggaataaatgttgttgtttccttgattgattcattcacacgtgaccaaat 6619836  T
Q  488 aacagaacatgttagtagtctgagaaaggaatctgttcaggttagtacacctccctttagtgttttcaattaccttgat 566  Q
    || | ||||| ||| |||| |||||||| ||| | |||| |||| ||| || || | | ||||||||||||||||||||    
T  6619835 aaaacaacatattactagtatgagaaagaaatattttcaagttattaccccaccttctggtgttttcaattaccttgat 6619757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 6618354 - 6618480
Alignment:
Q  9 ttagttaacgatgcaagtcacgatcaaccaattcacgagatgattccctcgaaaggcttacaggctagccaaatatcagtgggaatcgacagtatgccta 108  Q
    ||||||||| || ||||| |||||||||||||| ||  ||| |||||| ||||||||||||| ||| |||||| ||||  ||||||| | ||||||||||    
T  6618354 ttagttaactatacaagttacgatcaaccaattaacatgattattcccccgaaaggcttacaagcttgccaaaaatcaccgggaatc-aaagtatgccta 6618452  T
Q  109 ctctcgagaaggatgttattattattga 136  Q
    |||||||  ||||||| |||||||||||    
T  6618453 ctctcgaagaggatgtgattattattga 6618480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 453 - 566
Target Start/End: Original strand, 6678273 - 6678386
Alignment:
Q  453 gtttccttgattgattcattcacatggaagcaaataacagaacatgttagtagtctgagaaaggaatctgttcaggttagtacacctccctttagtgttt 552  Q
    ||||||||||||||||| |||| | |  | ||||||  ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | ||||  ||    
T  6678273 gtttccttgattgattcgttcagacgtgaccaaatagaagaacatattagtagtctgagaaaggaatctgatcaggttggtacaccaccttctagtaatt 6678372  T
Q  553 tcaattaccttgat 566  Q
    ||||||||||||||    
T  6678373 tcaattaccttgat 6678386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 6620063 - 6619963
Alignment:
Q  221 tgatgatgatggtgaagaggagaaagatcttggaagacatgacattgtagacaacat---ttccatggaaatggacattggagcaaattccaatatgcat 317  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||  ||||||||    ||| ||||||||||||| | ||||||||||||||||||||    
T  6620063 tgatgatgatgacgaagaggagaaagatcttgaaagacatggcattacagacaacaacaattcaatggaaatggacaatagagcaaattccaatatgcat 6619964  T
Q  318 g 318  Q
    |    
T  6619963 g 6619963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 6618493 - 6618593
Alignment:
Q  221 tgatgatgatggtgaagaggagaaagatcttggaagacatgacattgtag---acaacatttccatggaaatggacattggagcaaattccaatatgcat 317  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||  |    |||||| ||| ||||||||||||||| ||| ||||||||||||||||    
T  6618493 tgatgatgatgaggaagaggagaaagatcttgaaagacatggcattacatgcaacaacaattcaatggaaatggacattagagaaaattccaatatgcat 6618592  T
Q  318 g 318  Q
    |    
T  6618593 g 6618593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 6781342 - 6781282
Alignment:
Q  320 tcctattgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgct 380  Q
    |||||||||| | ||| |||||||||| ||||||| |||||||||||||||||||||||||    
T  6781342 tcctattgatatcgagcacaaacaagatggaattgaattcaaccaggaggggacagatgct 6781282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 6666905 - 6666964
Alignment:
Q  320 tcctattgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgc 379  Q
    |||||||||||||||| | ||| ||||   ||||||||||||||||||||||||||||||    
T  6666905 tcctattgatgtagagcaaaaagaagacaaaattggattcaaccaggaggggacagatgc 6666964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 538
Target Start/End: Original strand, 6666975 - 6667069
Alignment:
Q  444 aatgatgctgtttccttgattgattcattcacatggaagcaaataacagaacatgttagtagtctgagaaaggaatctgttcaggttagtacacc 538  Q
    ||||||| ||||||||||||||||   ||||||    | |||||||| |||||| |||  ||||||| |||| ||||||||||||||||||||||    
T  6666975 aatgatgatgtttccttgattgatatgttcacacatgatcaaataaccgaacatattacaagtctgaaaaagcaatctgttcaggttagtacacc 6667069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 6666585 - 6666637
Alignment:
Q  117 aaggatgttattattattgatgctgatgatggtgaagaggacatacaaggcagaac 172  Q
    ||||||||||||||||||||   |||||||| |||||||||||| |||| ||||||    
T  6666585 aaggatgttattattattga---tgatgatgatgaagaggacattcaagacagaac 6666637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 320 - 566
Target Start/End: Original strand, 46520370 - 46520616
Alignment:
Q  320 tcctattgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgctcaaaaggaagtcagtgagccaaaagctgaacaagagaag 419  Q
    ||||||||||||||| ||||||||| |   ||||||||||||||| ||||||||||||||| || || |||||||||| |||| | |||| |||||||||    
T  46520370 tcctattgatgtagatgacaaacaaaataaaattggattcaaccaagaggggacagatgctaaagagaaagtcagtgaaccaacacctgatcaagagaag 46520469  T
Q  420 cacacaaaatccactaagagaataaatgatgctgtttccttgattgattcattcacatggaagcaaataacagaacatgttagtagtctgagaaaggaat 519  Q
    || |||||||   | || | |||   |||||||||||||||||||||||  |||||| |  | ||||| ||||||||| ||| |||||| ||||||||||    
T  46520470 caaacaaaattgtcaaacacaattgttgatgctgtttccttgattgatttgttcacacgtgatcaaattacagaacatattaatagtctcagaaaggaat 46520569  T
Q  520 ctgttcaggttagtacacctccctttagtgttttcaattaccttgat 566  Q
    |||||| |||||||||| | || |  || ||||||||||||| ||||    
T  46520570 ctgttctggttagtacatcaccttccagcgttttcaattaccgtgat 46520616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 353 - 566
Target Start/End: Original strand, 49879621 - 49879834
Alignment:
Q  353 tggattcaaccaggaggggacagatgctcaaaaggaagtcagtgagccaaaagctgaacaagagaagcacacaaaatccactaagagaataaatgatgct 452  Q
    |||||||| |||||| |||| | | | | |||| ||| ||| |||| |||||| ||| ||||||||||| ||||||||| | || | ||||  ||| |||    
T  49879621 tggattcatccaggatgggataaacgataaaaaagaaatcattgagtcaaaagatgatcaagagaagcaaacaaaatccccaaatacaatagttgaggct 49879720  T
Q  453 gtttccttgattgattcattcacatggaagcaaataacagaacatgttagtagtctgagaaaggaatctgttcaggttagtacacctccctttagtgttt 552  Q
    ||||||||||||||||  |||||| |  | ||||||  ||||||| |||||||||||||||||||||||||||||||||||||||| ||    |||||||    
T  49879721 gtttccttgattgatttgttcacacgtgatcaaatagaagaacatattagtagtctgagaaaggaatctgttcaggttagtacaccacctgccagtgttt 49879820  T
Q  553 tcaattaccttgat 566  Q
    ||||||||||||||    
T  49879821 tcaattaccttgat 49879834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 49879507 - 49879585
Alignment:
Q  140 tgatgatggtgaagaggacatacaaggcagaactgcattcaaccagaagggggtaaatactaacagagaacttattatt 218  Q
    |||||| | |||||||||||||||||||||||||| ||||| |||| ||||||||||| |||| | |||||||||||||    
T  49879507 tgatgacgatgaagaggacatacaaggcagaactggattcatccaggagggggtaaatgctaaaaaagaacttattatt 49879585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 419
Target Start/End: Original strand, 46520175 - 46520268
Alignment:
Q  326 tgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgctcaaaaggaagtcagtgagccaaaagctgaacaagagaag 419  Q
    ||||| |||||||| ||||| | |||||||||||||||| ||||||||||| ||| || || |||| ||||| ||||||| ||| |||||||||    
T  46520175 tgatgaagaggacatacaaggaagaattggattcaaccacgaggggacagacgctaaagagaaagtgagtgaaccaaaagttgatcaagagaag 46520268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 696
Target Start/End: Original strand, 49879993 - 49880082
Alignment:
Q  607 cagctgacagattgtatttatatttgtcagtatctgcaaaaatacaaataaattg-tttttagtttgtgatttttattgaaatttcatttt 696  Q
    ||||||||||||| ||| || |||||||| | |||||||||| | || ||||||  |||||||||||||||||||||| ||||| ||||||    
T  49879993 cagctgacagattttatatacatttgtcaatttctgcaaaaaaa-aattaaatttatttttagtttgtgatttttattaaaattacatttt 49880082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 46520161 - 46520213
Alignment:
Q  132 attgatgctgatgatggtgaagaggacatacaaggcagaactgcattcaacca 184  Q
    ||||||| |||||||| |||||||||||||||||| |||| || |||||||||    
T  46520161 attgatggtgatgatgatgaagaggacatacaaggaagaattggattcaacca 46520213  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 697
Target Start/End: Original strand, 46520769 - 46520810
Alignment:
Q  656 aaattgtttttagtttgtgatttttattgaaatttcattttt 697  Q
    ||||| |||||||||||||||||||||| ||||| |||||||    
T  46520769 aaattatttttagtttgtgatttttattaaaattacattttt 46520810  T

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Target: chr1 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 326 - 566
Target Start/End: Original strand, 18134169 - 18134409
Alignment:
Q  326 tgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgctcaaaaggaagtcagtgagccaaaagctgaacaagagaagcacaca 425  Q
    ||||| |||||||| || ||| | ||||||||||||||| ||||||||||||||| |  |  | ||| |||| ||| ||||||| | ||||||||| |||    
T  18134169 tgatgaagaggacacactagacgaaattggattcaaccacgaggggacagatgctaatgaaaatgtccgtgaaccacaagctgatccagagaagcaaaca 18134268  T
Q  426 aaatccactaagagaataaatgatgctgtttccttgattgattcattcacatggaagcaaataacagaacatgttagtagtctgagaaaggaatctgttc 525  Q
    |||||| | || |  |||  |||||| || |||||||||||||  |||||| |  | |||| |||||||||| |||||||||||||||||||||||| ||    
T  18134269 aaatcctcaaatacgatagttgatgcagtctccttgattgatttgttcacacgtgaccaaacaacagaacatattagtagtctgagaaaggaatctgctc 18134368  T
Q  526 aggttagtacacctccctttagtgttttcaattaccttgat 566  Q
    ||||||||||||| |  | ||||||||||||||||||||||    
T  18134369 aggttagtacaccacattctagtgttttcaattaccttgat 18134409  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 54654437 - 54654491
Alignment:
Q  326 tgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgct 380  Q
    |||| ||||| |||||||||| || |||| |||||||||||||||||||||||||    
T  54654437 tgatatagagcacaaacaagatgggattgaattcaaccaggaggggacagatgct 54654491  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 534
Target Start/End: Original strand, 54654541 - 54654591
Alignment:
Q  484 aaataacagaacatgttagtagtctgagaaaggaatctgttcaggttagta 534  Q
    ||||||| |||||| |||| ||||||| |||| ||||||||||||||||||    
T  54654541 aaataactgaacatattagaagtctgaaaaagcaatctgttcaggttagta 54654591  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 16230898 - 16230959
Alignment:
Q  124 ttattattattgatgctgatgatggtgaagaggacatacaaggcagaactgcattcaaccag 185  Q
    ||||||||||||||| |||||||| |||||  ||||||| |||||||||||  |||||||||    
T  16230898 ttattattattgatgatgatgatgatgaagttgacatacgaggcagaactgggttcaaccag 16230959  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 34688631 - 34688719
Alignment:
Q  93 atcgacagtatgcctactctcgagaaggatgttattattattgatgctgatgatggtgaagaggacatacaaggcagaactgcattcaacca 184  Q
    |||||||||||||||||||||  ||||||  ||||||||||| ||  |||||||| ||||   ||||||| ||||||||||| |||||||||    
T  34688631 atcgacagtatgcctactctcaggaaggaacttattattatt-at--tgatgatgatgaaattgacatacgaggcagaactggattcaacca 34688719  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 34711043 - 34711131
Alignment:
Q  93 atcgacagtatgcctactctcgagaaggatgttattattattgatgctgatgatggtgaagaggacatacaaggcagaactgcattcaacca 184  Q
    |||||||||||||||||||||  ||||||  ||||||||||| ||  |||||||| ||||   ||||||| ||||||||||| |||||||||    
T  34711043 atcgacagtatgcctactctcaggaaggaacttattattatt-at--tgatgatgatgaaattgacatacgaggcagaactggattcaacca 34711131  T

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