View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8582_high_5 (Length: 307)
Name: NF8582_high_5
Description: NF8582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8582_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 42671651 - 42671943
Alignment:
| Q |
12 |
agcagagaatggtcaattaatttgtatttgtaaaactgtatgaagatgtttgtaacaaatagttgttaatcctttctggtataatctattttgatttgtt |
111 |
Q |
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| T |
42671651 |
agcagagaatggtcaattaatttgtatttgtaaaactgtatgaagatgtttgtaacaaatagttgttaatcctttctggtataatctattttgatttgtt |
42671750 |
T |
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| Q |
112 |
attcccaccaaaaatagt---------cgtcaatgcatgttgcaaaaatctcgtcgtcaacatatgtaacatattccttaacgaaaaacatatgtaacat |
202 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42671751 |
attcccaccaaaaatagttaaaagaatcgtcaatgcatgttacaaaaatctcgtcgtcaacatatgtaacatattccttaacgaaaaacatatgtaacat |
42671850 |
T |
|
| Q |
203 |
attggttattttttcttacaaagattaataattgtaaacattaaccactttctctatggcttcaaatggagaagaagaatcctccaccgtgat |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42671851 |
attggttattttttcttacaaagattaataattgtaaacattaaccactttctctatggcttcaaatggagaagaagaatcctccaccgtgat |
42671943 |
T |
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