View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8582_high_6 (Length: 214)
Name: NF8582_high_6
Description: NF8582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8582_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 31377273 - 31377135
Alignment:
| Q |
60 |
aatcaaaatatagtaaaataccgccatattctatgcgcccttttctcctctttacctgcttcaaaatctcatctttcttcattgaaaccacactaacttg |
159 |
Q |
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|||| ||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31377273 |
aatccaaatatattgaaataacaccatattctatgcgcccttttctcctctttacctgcttcaaaatctcatctttcttcattgaaaccacaccaacttg |
31377174 |
T |
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| Q |
160 |
agattttgaatcaaacccatttgagattaaggggttttg |
198 |
Q |
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| T |
31377173 |
agattttgaatcaaacccatttgagattaagggcttttg |
31377135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 43601363 - 43601496
Alignment:
| Q |
60 |
aatcaaaatatagtaaaataccgccatattctatgcgcccttttctcctctttacctgcttcaaaatctcatctttcttcattgaaaccacactaacttg |
159 |
Q |
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|||| ||||||| | ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
43601363 |
aatccaaatatattgaaataacaccatattctatgtgcccttttctcctctttacctgcttcaaaatctcatatttcttcattgaaacaacactaacttg |
43601462 |
T |
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| Q |
160 |
agattttgaatcaaacccatttgagattaagggg |
193 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
43601463 |
agattttgaatcaaacccatttgagattaagggg |
43601496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 43601541 - 43601609
Alignment:
| Q |
119 |
ttcaaaatctcatctttcttcattgaaaccacactaacttgagattttgaatcaaacccatttgagatt |
187 |
Q |
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| T |
43601541 |
ttcaaaatctcatttttattcattgaaacaacaccaaatagagattttgcatcaaacccatttgagatt |
43601609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 31377096 - 31377027
Alignment:
| Q |
119 |
ttcaaaatctcatctttctt-cattgaaaccacactaacttgagattttgaatcaaacccatttgagatt |
187 |
Q |
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| T |
31377096 |
ttcaaaatctcatttttttttcattgaaacaacaccaaatagagattttgcatcaaactcatttgagatt |
31377027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 36984872 - 36984757
Alignment:
| Q |
83 |
ccatattctatgcgcccttttctcctctttacctgcttcaaaatctcatctttcttcattgaaaccacactaacttgagattttgaatcaaacccatttg |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |
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| T |
36984872 |
ccatattctatgcgcccttttctcctctttacctgcttcaaaatctcatctttcttcattgaaacaacaccaacttgaaattttgaatcaaacccatttg |
36984773 |
T |
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| Q |
183 |
agattaaggggttttg |
198 |
Q |
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| T |
36984772 |
agattaaggggttttg |
36984757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 36984718 - 36984650
Alignment:
| Q |
119 |
ttcaaaatctcatctttcttcattgaaaccacactaacttgagattttgaatcaaacccatttgagatt |
187 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||| || ||||||||| ||||||||||||||||||| |
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| T |
36984718 |
ttcaaaatctcatttttattcattgaaacaacaccaaacagagattttgcatcaaacccatttgagatt |
36984650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 40842734 - 40842596
Alignment:
| Q |
60 |
aatcaaaatatagtaaaataccgccatattctatgcgcccttttctcctctttacctgcttcaaaatctcatctttcttcattgaaaccacactaacttg |
159 |
Q |
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|||| ||||||| | ||||| | ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
40842734 |
aatccaaatatattgaaataacaccatattttatacgcccttttctcctctttacctgcttcaaaatctcatctttcttcattgaaacaacaccaacttg |
40842635 |
T |
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| Q |
160 |
agattttgaatcaaacccatttgagattaaggggttttg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
40842634 |
agattttgaatcaaacccatttgagattaaggggttttg |
40842596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 7747327 - 7747248
Alignment:
| Q |
119 |
ttcaaaatctcatctttcttcattgaaaccacactaacttgagattttgaatcaaacccatttgagattaaggggttttg |
198 |
Q |
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||||||| ||||||||| |||| |||||| |||| || || |||||||||||||||||||||||||||| | |||||||| |
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| T |
7747327 |
ttcaaaacctcatctttattcactgaaacaacaccaagttcagattttgaatcaaacccatttgagattgaagggttttg |
7747248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 7747207 - 7747138
Alignment:
| Q |
122 |
aaaatctcatctttcttcattgaaaccacactaacttgagattttgaatcaaacccatttgagattaagg |
191 |
Q |
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|||||||||| ||| ||||||||||| || ||| || |||||||||| ||||||||||||||||||||| |
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| T |
7747207 |
aaaatctcatttttattcattgaaacaaccttaagttcagattttgaaccaaacccatttgagattaagg |
7747138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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