View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8582_low_2 (Length: 645)
Name: NF8582_low_2
Description: NF8582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8582_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 74 - 629
Target Start/End: Original strand, 39072845 - 39073402
Alignment:
| Q |
74 |
atcgtcttttgagtttgagtatcctttatactcgttttattgaatattcatttcttctgttgttcnnnnnnn-gttgatcaaatatctcaaattaacccc |
172 |
Q |
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| T |
39072845 |
atcgtcttttgagtttgagtatcatttatattcgttttattgaatattcatttcttctgttgttcaaaaaaaagttgatcaaatatctcaaattaacccc |
39072944 |
T |
|
| Q |
173 |
tttt-attgtttattccctcttctcttttagctaattaaagnnnnnnnnnnggtagaattttagctaattaaagtattaaatcaataaagatacacaaga |
271 |
Q |
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| T |
39072945 |
tttttattgtttattccctcttatcttttagctaattaaagttttttttttggtagaattttagctaattaaagtattaaatcaataaagatacacaaga |
39073044 |
T |
|
| Q |
272 |
tcatctaactagctagatccatcaaaattagaacctaacacttcatatttttcatatatataattgtttttggtcatggaaaataaccaaaataatacta |
371 |
Q |
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| T |
39073045 |
tcatctaactagctagatccatcaaaattagaacctaacacttcatatttttcatatatataattgtttttggtcatggaaaataaccaaaataatacta |
39073144 |
T |
|
| Q |
372 |
gtagcgcattcacaagcacttggaatcttgaaaaaatggaaacaaatgaacaaaaccgtattattctccaacaagatcatcatcaagttcctatgaattc |
471 |
Q |
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| T |
39073145 |
gtagcgcattcacaagcacttggaatcttgaaaaaatggaaacaaatgaacaaaaccgtattattctccaacaagatcatcatcaagttcctatgaattc |
39073244 |
T |
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| Q |
472 |
ttctgtaatttggccaccaaataactacaacaacatgatcatggnnnnnnnnnnnnnnnnntcttcatcaggttcactcagtgacatcttagggatccat |
571 |
Q |
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| T |
39073245 |
ttctgtaatttggccacaaaataactacagcaacatgatcatggcaccaccaccaccaccatcttcatcaggttcactcagtgacatcttagggatccat |
39073344 |
T |
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| Q |
572 |
cgaatcgaagacgtagaagaacaagaagaagagttaggagctatgaaggaaatgatgt |
629 |
Q |
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| T |
39073345 |
cgaatcgaagacgtagaagaacaagaagaagagttaggagctatgaaggaaatgatgt |
39073402 |
T |
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