View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8582_low_4 (Length: 501)

Name: NF8582_low_4
Description: NF8582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8582_low_4
NF8582_low_4
[»] chr5 (14 HSPs)
chr5 (167-498)||(19841814-19842148)
chr5 (11-172)||(19841629-19841788)
chr5 (208-411)||(31293486-31293690)
chr5 (200-464)||(35246201-35246467)
chr5 (200-464)||(24233703-24233969)
chr5 (355-491)||(6218067-6218203)
chr5 (208-496)||(22166284-22166574)
chr5 (347-400)||(14161305-14161358)
chr5 (243-346)||(6218589-6218692)
chr5 (121-163)||(39011532-39011574)
chr5 (130-164)||(6218799-6218833)
chr5 (243-300)||(375218-375275)
chr5 (125-161)||(22099132-22099169)
chr5 (121-157)||(35413590-35413626)
[»] chr6 (10 HSPs)
chr6 (193-499)||(15160264-15160574)
chr6 (193-499)||(15472847-15473155)
chr6 (193-499)||(15170276-15170584)
chr6 (193-499)||(15179048-15179356)
chr6 (243-499)||(15183902-15184163)
chr6 (195-304)||(3024922-3025031)
chr6 (233-309)||(22757273-22757349)
chr6 (124-160)||(12336174-12336211)
chr6 (127-164)||(18093690-18093727)
chr6 (121-157)||(13495986-13496022)
[»] chr2 (12 HSPs)
chr2 (222-495)||(23249730-23250005)
chr2 (201-497)||(35431153-35431451)
chr2 (193-365)||(28920299-28920473)
chr2 (353-499)||(3250381-3250527)
chr2 (207-300)||(24490062-24490155)
chr2 (351-401)||(43450616-43450666)
chr2 (121-161)||(26311151-26311192)
chr2 (124-162)||(16238718-16238757)
chr2 (121-152)||(33033644-33033675)
chr2 (123-161)||(15177843-15177881)
chr2 (128-176)||(33560521-33560569)
chr2 (121-157)||(39606626-39606662)
[»] scaffold1243 (1 HSPs)
scaffold1243 (243-499)||(1706-1967)
[»] chr3 (10 HSPs)
chr3 (215-497)||(28033688-28033972)
chr3 (126-176)||(28033566-28033616)
chr3 (201-497)||(11294782-11295080)
chr3 (101-161)||(14092719-14092780)
chr3 (121-161)||(30187266-30187307)
chr3 (122-163)||(17794530-17794572)
chr3 (122-163)||(19102970-19103012)
chr3 (196-238)||(22757452-22757494)
chr3 (130-164)||(31881985-31882019)
chr3 (121-157)||(17580914-17580950)
[»] chr4 (15 HSPs)
chr4 (353-497)||(55109393-55109537)
chr4 (200-464)||(17403541-17403807)
chr4 (209-373)||(19145443-19145611)
chr4 (195-309)||(5475286-5475400)
chr4 (347-461)||(20370191-20370305)
chr4 (347-431)||(4119336-4119420)
chr4 (209-312)||(1858249-1858352)
chr4 (124-162)||(8683982-8684021)
chr4 (124-162)||(22197655-22197694)
chr4 (124-162)||(37113207-37113246)
chr4 (121-161)||(10359056-10359097)
chr4 (124-152)||(6453542-6453570)
chr4 (128-160)||(17403894-17403926)
chr4 (125-169)||(31765695-31765739)
chr4 (128-176)||(39235960-39236008)
[»] chr1 (13 HSPs)
chr1 (208-489)||(3854171-3854453)
chr1 (207-312)||(32590677-32590782)
chr1 (197-468)||(42913815-42914088)
chr1 (200-373)||(4693888-4694063)
chr1 (121-164)||(28970639-28970682)
chr1 (200-322)||(51410865-51410987)
chr1 (128-164)||(43912853-43912889)
chr1 (217-297)||(17541332-17541412)
chr1 (128-164)||(51411054-51411090)
chr1 (122-164)||(3854057-3854099)
chr1 (336-411)||(43913065-43913142)
chr1 (125-161)||(27895499-27895536)
chr1 (124-152)||(33799148-33799176)
[»] chr8 (16 HSPs)
chr8 (195-481)||(23636711-23636998)
chr8 (208-491)||(6654438-6654723)
chr8 (208-491)||(6734840-6735125)
chr8 (195-410)||(28211146-28211364)
chr8 (201-312)||(30702412-30702523)
chr8 (208-491)||(6744176-6744461)
chr8 (201-312)||(18004484-18004595)
chr8 (201-312)||(30288442-30288553)
chr8 (353-448)||(30288304-30288399)
chr8 (243-373)||(44097400-44097532)
chr8 (124-162)||(27420368-27420407)
chr8 (130-164)||(6654795-6654829)
chr8 (130-164)||(6735197-6735231)
chr8 (353-455)||(18004638-18004740)
chr8 (126-161)||(23556069-23556105)
chr8 (126-161)||(42747271-42747307)
[»] chr7 (15 HSPs)
chr7 (208-422)||(42266161-42266377)
chr7 (195-411)||(13451121-13451338)
chr7 (208-479)||(923691-923964)
chr7 (355-470)||(38432646-38432761)
chr7 (231-304)||(9600371-9600444)
chr7 (231-304)||(9827942-9828015)
chr7 (378-475)||(29672791-29672888)
chr7 (121-164)||(34148399-34148442)
chr7 (121-164)||(34178682-34178725)
chr7 (124-162)||(7282561-7282600)
chr7 (121-152)||(9604264-9604295)
chr7 (121-152)||(9831835-9831866)
chr7 (124-162)||(44521503-44521542)
chr7 (124-161)||(10427830-10427868)
chr7 (108-152)||(3940945-3940989)
[»] scaffold1951 (1 HSPs)
scaffold1951 (121-161)||(477-518)
[»] scaffold0309 (1 HSPs)
scaffold0309 (121-157)||(1920-1956)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 167 - 498
Target Start/End: Original strand, 19841814 - 19842148
Alignment:
Q  167 aaaaaatacagaactnnnnnnncaaaatgaaagctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtg 266  Q
    |||||||||||||||       ||||| ||||||||| | |||| |||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  19841814 aaaaaatacagaactaaaaaaacaaaacgaaagctaccccataatactcatacaaagtaaagggtgccgccatccgtcattataactgaaaatggaagtg 19841913  T
Q  267 agcatattagcatttaaccatgaaaaagacaaaaactttacattgtttaataattggaccaaattccgagctttgtttttaaa---tcatgttgtttctt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  19841914 agcatattagcatttaaccatgaaaaagacaaaaactttacattgtttaataattggaccaaattccgagctttgtttttaaaaaatcatgttgtttctt 19842013  T
Q  364 tcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggt 463  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19842014 tcctttcaaacaatccaaacacaagcatgccagatcactttgaggaaaggatatgtaaaacgtggtaaccccgccatgtgaccaaactgatgaagatggt 19842113  T
Q  464 cgcgaacggagtctggagagatgaatgaaataccg 498  Q
    |||||| ||||||||||||||||||||||||||||    
T  19842114 cgcgaatggagtctggagagatgaatgaaataccg 19842148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 19841629 - 19841788
Alignment:
Q  11 ttattcttccaattcaatcattaaaaagtagcactgtgtagtgtgaagtgccacttcatatcattaaatttcnnnnnnnnnnaagaagcccaaaatgata 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||           |||||| |||||||||||    
T  19841629 ttattcttc-aattcaatcattaaaaagtagcactgtgtagtgtgaagtgccacttcatatcattatattttttatttttttaagaag-ccaaaatgata 19841726  T
Q  111 ataaatgatgaagagtgattcatctcgcacaaggtgtgcaaagagaatcactccataaaaaa 172  Q
    |||||| |||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||    
T  19841727 ataaatcatgaagagtgattcatctcgtacaagatgtgcaaaaagaatcactctataaaaaa 19841788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 208 - 411
Target Start/End: Original strand, 31293486 - 31293690
Alignment:
Q  208 taacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttac 307  Q
    |||||| |||||| | |||||| ||||||||||  |||||||||||||||   |||||  |||  ||||  |||||||||||||||||||||||||| ||    
T  31293486 taacacccatacataataaagggtgccgccatcagtcattataactgaaaacagaagtttgcagcttagtttttaaccatgaaaaagacaaaaacttaac 31293585  T
Q  308 attgtttaataattggaccaaattccgagctttgtttttaaa-tcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttga 406  Q
     | || |||||| | |||||||| | ||||||| |||||||| | ||||||||||||||||| |||| ||||||||||| |||||| || ||||||||||    
T  31293586 gtagtctaataacttgaccaaatcctgagctttatttttaaaattatgttgtttctttccttccaaataatccaaacactagcatgccaaatcactttga 31293685  T
Q  407 ggaaa 411  Q
    |||||    
T  31293686 ggaaa 31293690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 200 - 464
Target Start/End: Original strand, 35246201 - 35246467
Alignment:
Q  200 ctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaa 299  Q
    |||||| |||||||||||||||  |||||| |||||||| |  ||||||||||||||||  ||||||| ||||| ||| |||| ||| |||||||| | |    
T  35246201 ctactccataacactcatacaagttaaagggtgccgccaccagtcattataactgaaagctgaagtgaacatatgagcctttagccaagaaaaagaaaca 35246300  T
Q  300 aactttacattgtttaataattggaccaaattccgagctttgttttt--aaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcaga 397  Q
    ||||||||||||| |||||||||   || || ||  |||||||||||  |||| ||||||||||||||||| |||||  ||||||| ||||||||  |||    
T  35246301 aactttacattgtctaataattgtgtcacatcccatgctttgttttttaaaattatgttgtttctttccttccaaactgtccaaacgcaagcatgctaga 35246400  T
Q  398 tcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtc 464  Q
    | ||||||| ||||  || ||| |  |  |||||||||| |||||| ||||| ||||||| ||||||    
T  35246401 taactttgaagaaagaatgtgtgactctcggtaaccccgccatgtggccaaattgatgaaaatggtc 35246467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 464
Target Start/End: Original strand, 24233703 - 24233969
Alignment:
Q  200 ctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaa 299  Q
    |||||| ||||||| |||||||  |||| | |||||||| |  ||||||||||||||||  ||||| | | |||  || |||| ||| |||||||| | |    
T  24233703 ctactccataacacccatacaagttaaatggtgccgccaccagtcattataactgaaagcagaagttaacctatgcgcctttagccaagaaaaagaaaca 24233802  T
Q  300 aactttacattgtttaataattggaccaaattccgagctttgtttttaaa--tcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcaga 397  Q
    ||||||||||||| |||||||||   ||||| ||  ||||||||||||||  |  |||||||||||||||| |||||  ||||||| |||||||| ||||    
T  24233803 aactttacattgtctaataattgtgtcaaatcccatgctttgtttttaaagattttgttgtttctttccttccaaactgtccaaacgcaagcatgccaga 24233902  T
Q  398 tcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtc 464  Q
    | ||||||| ||||  || ||||   |  || |||||||||||||| ||||| ||||||| ||||||    
T  24233903 taactttgaagaaagaatgtgtagctctcggaaaccccgtcatgtggccaaattgatgaaaatggtc 24233969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 491
Target Start/End: Complemental strand, 6218203 - 6218067
Alignment:
Q  355 ttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgat 454  Q
    ||||||||||| || |||||  |||||||  ||||||||||||||||| ||| ||||  || |||||| ||||||||||||| ||||||||||||||||     
T  6218203 ttgtttctttctttccaaaccgtccaaacgtaagcatgtcagatcactctgaagaaagaatgtgtaaatcgtggtaaccccgccatgtgaccaaactgaa 6218104  T
Q  455 gaagatggtcgcgaacggagtctggagagatgaatga 491  Q
     |||||| || |||||  |||| ||||| ||||||||    
T  6218103 taagatgttcacgaacaaagtcaggagaaatgaatga 6218067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 208 - 496
Target Start/End: Complemental strand, 22166574 - 22166284
Alignment:
Q  208 taacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttac 307  Q
    |||||| |||||||| |||||| || ||||| |  | ||||||||||||||   |||| ||| |||| ||  ||||||| |||||||| | |||||||||    
T  22166574 taacacccatacaaattaaagggtgtcgccaccagtaattataactgaaagctcaagttagcctattcgcccttaaccaagaaaaagatacaaactttac 22166475  T
Q  308 attgtttaataattggaccaaattccgagctttgttttt--aaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttg 405  Q
     |||||||||||||| ||||| |   | ||||||||| |  | ||| | |||||||||||||| ||||   |||| |  |||||||| || |||||| ||    
T  22166474 tttgtttaataattgaaccaagtctagtgctttgtttctgaagatcctattgtttctttccttccaaattgtccatatgcaagcatgccaaatcactctg 22166375  T
Q  406 aggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatgaaatac 496  Q
    | ||||  ||  ||||| || |||||||||| |||||||||||| |||   ||||| || |||||  |||| ||||| |||||||| ||||    
T  22166374 aagaaagaatgcgtaaatcgcggtaaccccgccatgtgaccaaattgaattagatgctcacgaacatagtcaggagaaatgaatgagatac 22166284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 14161358 - 14161305
Alignment:
Q  347 aaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatca 400  Q
    |||||||||||||||||||||||||||  | ||| |||||||||||||||||||    
T  14161358 aaatcatgttgtttctttcctttcaaatgagccagacacaagcatgtcagatca 14161305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 6218692 - 6218589
Alignment:
Q  243 tcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttacattgtttaataattggaccaaattccgagctttgt 342  Q
    ||||||||||||||||  ||||||||| |||| ||  ||||||| |||||||| | ||||||||| |||| || |||||| ||||| | | | |||||||    
T  6218692 tcattataactgaaagctgaagtgagcctattcgcccttaaccaagaaaaagatacaaactttactttgtctagtaattgaaccaagtccagtgctttgt 6218593  T
Q  343 tttt 346  Q
    ||||    
T  6218592 tttt 6218589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 39011574 - 39011532
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaagagaatcactc 163  Q
    ||||| |||||||||||||||||||||||| ||||||||||||    
T  39011574 aagagagattcatctcgcacaaggtgtgcagagagaatcactc 39011532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 6218833 - 6218799
Alignment:
Q  130 tcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    ||||||||||||||||||||||||||| |||||||    
T  6218833 tcatctcgcacaaggtgtgcaaagagagtcactcc 6218799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 375275 - 375218
Alignment:
Q  243 tcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaa 300  Q
    |||||||||||||||||| ||||   |||||| || |||||||| |||||||||||||    
T  375275 tcattataactgaaagtgaaagtagtcatattggcctttaaccaagaaaaagacaaaa 375218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 22099169 - 22099132
Alignment:
Q  125 gtgattcatctcgcacaaggtgtgc-aaagagaatcac 161  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  22099169 gtgattcatctcgcacaaggtgtgcaaaagagaatcac 22099132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 35413590 - 35413626
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaagagaa 157  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  35413590 aagagagattcatctcgcacaaggtgtgcagagagaa 35413626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 193 - 499
Target Start/End: Original strand, 15160264 - 15160574
Alignment:
Q  193 atgaaagctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaa 292  Q
    |||||||||| || | |||||  ||||| |||||||  |||||||| |  |||||||||||||||| |||||| ||||| ||||| |||||||| |||||    
T  15160264 atgaaagctattccacaacacctatacatagtaaagagtgccgccaccagtcattataactgaaagcggaagttagcatgttagcttttaaccaagaaaa 15160363  T
Q  293 agacaaaaactttacattgtttaataattggaccaaattccgagctttgttttt----aaatcatgttgtttctttcctttcaaacaatccaaacacaag 388  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||||||||||    |||||||||| ||||||||||| |||||||||||||||||||    
T  15160364 agacataaactttacattgtttaataagtgaaccaaatcccgagctttgtttttttaaaaatcatgttatttctttccttccaaacaatccaaacacaag 15160463  T
Q  389 catgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaa 488  Q
    ||||  |||||||||| ||||||  || | |||| |  |||||||||| ||| |||| ||||||||||||||| ||||||||  |||||||||| |||||    
T  15160464 catgcgagatcactttcaggaaagaatgtttaaatcacggtaaccccgccatatgacaaaactgatgaagatgatcgcgaaccaagtctggagatatgaa 15160563  T
Q  489 tgaaataccga 499  Q
    |||||||||||    
T  15160564 tgaaataccga 15160574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 193 - 499
Target Start/End: Complemental strand, 15473155 - 15472847
Alignment:
Q  193 atgaaagctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaa 292  Q
    |||||||||| || ||||||| |||||| |||||||| |||||| | |  ||||||||||||||||  ||||| ||||||||||| |||||||| |||||    
T  15473155 atgaaagctattccataacacccatacatagtaaagggtgccgcaaccagtcattataactgaaagcagaagtcagcatattagcttttaaccaagaaaa 15473056  T
Q  293 agacaaaaactttacattgtttaataattggaccaaattccgagctttgttttt--aaatcatgttgtttctttcctttcaaacaatccaaacacaagca 390  Q
    ||||| |||||||||||||| |||||| || ||||||| | |||||||||||||  ||||| |||| ||||||||||| |||||||| ||||| ||||||    
T  15473055 agacataaactttacattgtctaataagtgaaccaaatcctgagctttgtttttaaaaatcctgttatttctttccttccaaacaattcaaactcaagca 15472956  T
Q  391 tgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatg 490  Q
    ||  |||||||||| ||||||  || | |||| ||  ||||||| | ||| || ||| ||||||||||||| |||||||   ||||||||||  ||||||    
T  15472955 tgcgagatcactttcaggaaagaatgtttaaatcgcagtaaccctgccatatggccacactgatgaagatgatcgcgaatcaagtctggagatttgaatg 15472856  T
Q  491 aaataccga 499  Q
    |||||||||    
T  15472855 aaataccga 15472847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 193 - 499
Target Start/End: Original strand, 15170276 - 15170584
Alignment:
Q  193 atgaaagctactctataacactcatacaaagtaaaggatgccgccatcca-tcattataactgaaagtggaagtgagcatattagcatttaaccatgaaa 291  Q
    |||||||||| || ||||||| |||||| |||||||| | ||||| |||| |||||||||||||||| |||||| ||||||||||| |||||||| ||||    
T  15170276 atgaaagctattccataacacacatacatagtaaagggtaccgcc-tccagtcattataactgaaagcggaagtcagcatattagcttttaaccaagaaa 15170374  T
Q  292 aagacaaaaactttacattgtttaataattggaccaaattccgagctttgttttt--aaatcatgttgtttctttcctttcaaacaatccaaacacaagc 389  Q
    |||||| |||||||||||||| |||||| || ||||||| | |||||||||||||  |||||  ||| |||||||||| ||||||||||||| |||||||    
T  15170375 aagacataaactttacattgtctaataagtgaaccaaatcctgagctttgtttttaaaaatccggttatttctttcctatcaaacaatccaaccacaagc 15170474  T
Q  390 atgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaat 489  Q
    |||  |||||||||| ||||||  || | |||| ||  ||||||||| ||| || ||| |||||||||  || ||| ||||  ||||| |||| ||||||    
T  15170475 atgcgagatcactttcaggaaagaatgtttaaatcgcagtaaccccgccatatggccacactgatgaaattgatcgtgaaccaagtctagagatatgaat 15170574  T
Q  490 gaaataccga 499  Q
    ||||||||||    
T  15170575 gaaataccga 15170584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 193 - 499
Target Start/End: Original strand, 15179048 - 15179356
Alignment:
Q  193 atgaaagctactctataacactcatacaaagtaaaggatgccgccatcca-tcattataactgaaagtggaagtgagcatattagcatttaaccatgaaa 291  Q
    |||||||||| || ||||||| |||||| |||||||| | ||||| |||| |||||||||||||||| |||||| ||||||||||| |||||||| ||||    
T  15179048 atgaaagctattccataacacacatacatagtaaagggtaccgcc-tccagtcattataactgaaagcggaagtcagcatattagcttttaaccaagaaa 15179146  T
Q  292 aagacaaaaactttacattgtttaataattggaccaaattccgagctttgttttt--aaatcatgttgtttctttcctttcaaacaatccaaacacaagc 389  Q
    |||||| |||||||||||||| |||||| || ||||||| | |||||||||||||  |||||  ||| |||||||||| ||||||||||||| |||||||    
T  15179147 aagacataaactttacattgtctaataagtgaaccaaatcctgagctttgtttttaaaaatccggttatttctttcctatcaaacaatccaaccacaagc 15179246  T
Q  390 atgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaat 489  Q
    |||  |||||||||| ||||||  || | |||| ||  ||||||||| ||| || ||| |||||||||  || ||| ||||  ||||| |||| ||||||    
T  15179247 atgcgagatcactttcaggaaagaatgtttaaatcgcagtaaccccgccatatggccacactgatgaaattgatcgtgaaccaagtctagagatatgaat 15179346  T
Q  490 gaaataccga 499  Q
    ||||||||||    
T  15179347 gaaataccga 15179356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 243 - 499
Target Start/End: Original strand, 15183902 - 15184163
Alignment:
Q  243 tcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttacattgtttaataattggaccaaattccgagctttgt 342  Q
    |||||||||||||||| |||||| |||||||| || |||||||| |||||||| | |||||||||||||| |||||| || ||||||| | |||||||||    
T  15183902 tcattataactgaaagcggaagtcagcatatttgcttttaaccaagaaaaagaaataaactttacattgtctaataagtgaaccaaatcctgagctttgt 15184001  T
Q  343 tttt--aaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccg---t 437  Q
    ||||  ||||  |||| ||| ||||||| ||||||||||||||| |||||||  |||||||||| ||||||  || | |||| || ||||||||||        
T  15184002 ttttaaaaattctgttatttatttccttccaaacaatccaaacagaagcatgcgagatcactttcaggaaagaatgtttaaatcgcggtaaccccgccac 15184101  T
Q  438 catgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatgaaataccga 499  Q
    ||| |||||||||||||||||||| ||| ||||  |||||||||| ||||||||||||||||    
T  15184102 catatgaccaaactgatgaagatgatcgtgaaccaagtctggagatatgaatgaaataccga 15184163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 304
Target Start/End: Original strand, 3024922 - 3025031
Alignment:
Q  195 gaaagctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaag 294  Q
    ||||||||||| || |||  || ||| | |||||| |||||||| |  ||| |||||||||||| | |||||||||| ||||| || | ||| |||||||    
T  3024922 gaaagctactccatgacatccacacataataaagggtgccgccaccggtcagtataactgaaagcgtaagtgagcattttagctttcatccaagaaaaag 3025021  T
Q  295 acaaaaactt 304  Q
    ||||||||||    
T  3025022 acaaaaactt 3025031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 22757273 - 22757349
Alignment:
Q  233 ccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttacat 309  Q
    |||||| || ||||| |||| |||||||||||||| ||| ||||| |||||||| | ||| ||||||||||| ||||    
T  22757273 ccgccacccgtcattgtaaccgaaagtggaagtgaacatcttagcttttaaccaagtaaacgacaaaaacttgacat 22757349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 12336211 - 12336174
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgc-aaagagaatca 160  Q
    |||||||||||||||||||||||||| |||||||||||    
T  12336211 agtgattcatctcgcacaaggtgtgcaaaagagaatca 12336174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 18093727 - 18093690
Alignment:
Q  127 gattcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  18093727 gattcatctcgcacaagatgtgctaagagaatcactcc 18093690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 13495986 - 13496022
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaagagaa 157  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  13495986 aagagagattcatctcgcacaaggtgtgcagagagaa 13496022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 222 - 495
Target Start/End: Complemental strand, 23250005 - 23249730
Alignment:
Q  222 agtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttacattgtttaataatt 321  Q
    |||||||| | |||||| |  |||||||||||||||| |||||| ||||||||||| |||||||| |||||||||| |||||||||||||| |||||| |    
T  23250005 agtaaagggttccgccaccagtcattataactgaaagcggaagttagcatattagcttttaaccaagaaaaagacataaactttacattgtctaataagt 23249906  T
Q  322 ggaccaaattccgagctttgtttttaaa--tcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgt 419  Q
    | |||||||   ||||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||  || |||    
T  23249905 gaaccaaatcgtgagctttgtttttaaaaatcctgttgtttctttccttccaaacaatccaaacacaagcatgcgagatcactttcaggaaagaatgtgt 23249806  T
Q  420 aaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatgaaata 495  Q
    ||| | |||||||| || ||| |||||||||||||||||||| ||| |||| |||| |||||| ||||||||||||    
T  23249805 aaatcatggtaacctcgccatatgaccaaactgatgaagatgatcgtgaactgagtatggagatatgaatgaaata 23249730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 201 - 497
Target Start/End: Complemental strand, 35431451 - 35431153
Alignment:
Q  201 tactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaa 300  Q
    ||||| ||||||| |||||||| |||||| |||||||| |  ||||||||||||||||  ||||| ||| |||||||||||||||| ||||| |||| ||    
T  35431451 tactccataacacccatacaaattaaagggtgccgccaccagtcattataactgaaagctgaagttagcctattagcatttaaccaagaaaatgacacaa 35431352  T
Q  301 actttacattgtttaataattggaccaaattccgagctttgt-ttttaa-atcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagat 398  Q
    | ||||||||||  |||| |||  |||| |     ||||||| |||||| |||||||||||| ||||||| ||||||||||| || |||||||| || ||    
T  35431351 attttacattgtcaaatagttgttccaagtcttctgctttgtcttttaagatcatgttgtttgtttccttccaaacaatccacacgcaagcatgccaaat 35431252  T
Q  399 cactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatgaaatacc 497  Q
    ||||||||   ||  || |||||| || |||||| | | |||||||||||||||||| |||||  | |  || |||||||||||||||||  |||||||    
T  35431251 cactttgaaataagaatgtgtaaatcgcggtaactctgccatgtgaccaaactgatgtagatgagcactgacagagtctggagagatgaaataaatacc 35431153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 193 - 365
Target Start/End: Original strand, 28920299 - 28920473
Alignment:
Q  193 atgaaagctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaa 292  Q
    |||||| |||||| ||||||| ||||||||||||||| |||||||| |  |||||||||||||||| |||||| ||| ||||||| |||| ||| |||||    
T  28920299 atgaaaactactccataacacccatacaaagtaaagggtgccgccaccagtcattataactgaaagcggaagttagcgtattagcctttagccaagaaaa 28920398  T
Q  293 agacaaaaactttacattgtttaataattggaccaaattccgagctttgttttt--aaatcatgttgtttctttc 365  Q
    ||| | |||||||||| ||| ||||||||| || || | |||||| ||||| ||  |||||||||||||||||||    
T  28920399 agaaacaaactttacagtgtctaataattgaacaaagtcccgagcattgttattgaaaatcatgttgtttctttc 28920473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 353 - 499
Target Start/End: Original strand, 3250381 - 3250527
Alignment:
Q  353 tgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactg 452  Q
    |||||||||||||||| |||||||||||||| |||||||| ||| |||| |||||  ||  ||  ||||| || |||||||||| |||||||||||| ||    
T  3250381 tgttgtttctttccttccaaacaatccaaacgcaagcatgccaggtcaccttgagataagaatgagtaaatcgcggtaaccccgccatgtgaccaaattg 3250480  T
Q  453 atgaagatggtcgcgaacggagtctggagagatgaatgaaataccga 499  Q
    ||||||||| || |  || |||||||||||||||||  |||||||||    
T  3250481 atgaagatgatcactgacagagtctggagagatgaaataaataccga 3250527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 300
Target Start/End: Original strand, 24490062 - 24490155
Alignment:
Q  207 ataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaa 300  Q
    ||||||| |||||||||||||||||| |||||||| || ||||||||||||| | ||||| | ||||| || |||| ||| |||||||| ||||    
T  24490062 ataacacccatacaaagtaaaggatgtcgccatccgtcgttataactgaaagcgaaagtgggtatatttgcctttagccaagaaaaagataaaa 24490155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 43450666 - 43450616
Alignment:
Q  351 catgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcac 401  Q
    |||||||||||||||||| ||||  | ||||||||||||||||||||||||    
T  43450666 catgttgtttctttccttccaaatgagccaaacacaagcatgtcagatcac 43450616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 26311192 - 26311151
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgc-aaagagaatcac 161  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  26311192 aagagtgattcatctcgcacaaggtgtgcaaaagagaatcac 26311151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 16238718 - 16238757
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgc-aaagagaatcact 162  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  16238718 agtgattcatctcgcacaaggtgtgcaaaagagaatcact 16238757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 33033644 - 33033675
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaa 152  Q
    ||||||||||||||||||||||||||||||||    
T  33033644 aagagtgattcatctcgcacaaggtgtgcaaa 33033675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 15177881 - 15177843
Alignment:
Q  123 gagtgattcatctcgcacaaggtgtgcaaagagaatcac 161  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  15177881 gagtaattcatctcgcacaaggtgtgcaaagagagtcac 15177843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 33560569 - 33560521
Alignment:
Q  128 attcatctcgcacaaggtgtgcaaagagaatcactccataaaaaataca 176  Q
    |||||||||||||||| |||||| | |||||||||||  ||||||||||    
T  33560569 attcatctcgcacaagatgtgcagaaagaatcactcctcaaaaaataca 33560521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 39606662 - 39606626
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaagagaa 157  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  39606662 aagagagattcatctcgcacaaggtgtgcagagagaa 39606626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1243 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold1243
Description:

Target: scaffold1243; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 243 - 499
Target Start/End: Complemental strand, 1967 - 1706
Alignment:
Q  243 tcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttacattgtttaataattggaccaaattccgagctttgt 342  Q
    |||||||||||||||  |||||| | |||||| || |||||||| |||||||| | |||||||||||||| |||||| || |||||||   |||||||||    
T  1967 tcattataactgaaaacggaagtcaacatatttgcttttaaccaagaaaaagaaataaactttacattgtctaataagtgaaccaaatcatgagctttgt 1868  T
Q  343 tttt--aaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccg---t 437  Q
    ||||  ||||| |||| ||||||||||| |||||||||||||||||||||||  |||||| ||| ||||||  || | |||| || ||||||||||        
T  1867 ttttacaaatcctgttatttctttccttccaaacaatccaaacacaagcatgcgagatcattttcaggaaagaatgtttaaatcgcggtaaccccgccac 1768  T
Q  438 catgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatgaaataccga 499  Q
    ||| |||||||||||||||||||| | || |||  |||||||||| ||||||||||||||||    
T  1767 catatgaccaaactgatgaagatgatagcaaaccaagtctggagatatgaatgaaataccga 1706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 215 - 497
Target Start/End: Original strand, 28033688 - 28033972
Alignment:
Q  215 catacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttacattgttt 314  Q
    |||||||| ||| || | ||||||||  |||||||||||||||| |||||||||||||||||| || | ||| || ||||||||||| |||||||| | |    
T  28033688 catacaaattaaggggtaccgccatcagtcattataactgaaagcggaagtgagcatattagccttcagccaagagaaagacaaaaattttacattatct 28033787  T
Q  315 aataattggaccaaattccgagctttgtttttaaat--catgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaat 412  Q
    | ||||||  ||| || | |  |||||||||||||   | |||||||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||||     
T  28033788 actaattgagccacatcctgcactttgtttttaaaaaccttgttgtttctttccttccaaactatccatacacaagcatgccaaatcactttaaggaaaa 28033887  T
Q  413 gatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatgaaatacc 497  Q
     || |||||| ||  |||| |||| || ||||||||||||||||| ||| |||||||| ||  |||||||||| || ||||||||    
T  28033888 aatgtgtaaatcgcagtaatcccgccaagtgaccaaactgatgaatatgatcgcgaacagaagctggagagataaaagaaatacc 28033972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 28033566 - 28033616
Alignment:
Q  126 tgattcatctcgcacaaggtgtgcaaagagaatcactccataaaaaataca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28033566 tgattcatctcgcacaaggtgtgcaaagagaatcactccataaaaaataca 28033616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 497
Target Start/End: Complemental strand, 11295080 - 11294782
Alignment:
Q  201 tactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaa 300  Q
    ||||| ||||||  |||||||| ||||||||||||||| | |||| ||||||||||||  ||||| ||  ||||||| ||||||||  | ||||||| ||    
T  11295080 tactccataacatccatacaaattaaaggatgccgccaccaatcactataactgaaagctgaagtaaggctattagcctttaaccaaaagaaagacacaa 11294981  T
Q  301 actttacattgtttaataattggaccaaattccgagctttgt--ttttaaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagat 398  Q
    ||||||||||||  |  | |||  |||| |   | |||||||  ||  | ||||||| |||||||||||| ||||  |||||||||||||| || |||||    
T  11294980 actttacattgtcaacaatttgttccaagtcttgtgctttgtcattgaagatcatgtagtttctttccttccaaaggatccaaacacaagcgtgccagat 11294881  T
Q  399 cactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatgaaatacc 497  Q
    ||| ||||| |||  ||  ||||| || |||||||||| ||| |||  || ||| |||||||| || |   | |||||||||||||||||  |||||||    
T  11294880 caccttgagaaaagaatgagtaaatcgcggtaaccccgccatttgagtaagctgttgaagatgatcactggcagagtctggagagatgaaataaatacc 11294782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 14092780 - 14092719
Alignment:
Q  101 caaaatgataataaatgatgaagagtgattcatctcgcacaaggtgtg-caaagagaatcac 161  Q
    ||||||| || ||||| || ||||||||||||||||||||||||||||  ||||||||||||    
T  14092780 caaaatgttattaaatcattaagagtgattcatctcgcacaaggtgtgtaaaagagaatcac 14092719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 30187266 - 30187307
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgc-aaagagaatcac 161  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  30187266 aagagtgattcatctcgcacaaggtgtgcaaaagagaatcac 30187307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 17794530 - 17794572
Alignment:
Q  122 agagtgattcatctcgcacaaggtgtgc-aaagagaatcactc 163  Q
    |||||||||||| ||||||||||||||| ||||||||||||||    
T  17794530 agagtgattcatttcgcacaaggtgtgcaaaagagaatcactc 17794572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 19102970 - 19103012
Alignment:
Q  122 agagtgattcatctcgcacaaggtgtgc-aaagagaatcactc 163  Q
    |||||||||||| ||||||||||||||| ||||||||||||||    
T  19102970 agagtgattcatttcgcacaaggtgtgcaaaagagaatcactc 19103012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 22757452 - 22757494
Alignment:
Q  196 aaagctactctataacactcatacaaagtaaaggatgccgcca 238  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  22757452 aaagctacacaataacactcatacaatgtaaaggatgccgcca 22757494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 31881985 - 31882019
Alignment:
Q  130 tcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    |||||| ||||||||||||||||||||||||||||    
T  31881985 tcatcttgcacaaggtgtgcaaagagaatcactcc 31882019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 17580914 - 17580950
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaagagaa 157  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  17580914 aagagagattcatctcgcacaaggtgtgcagagagaa 17580950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 353 - 497
Target Start/End: Complemental strand, 55109537 - 55109393
Alignment:
Q  353 tgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactg 452  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||||||||||  |||  ||  |||||||| |||||||||| |||||||||||||||    
T  55109537 tgttgtttctttcctttcaaacgatccaaacgcaagcatgccagatcactttgaaaaaagaatgggtaaaacgcggtaaccccgccatgtgaccaaactg 55109438  T
Q  453 atgaagatggtcgcgaacggagtctggagagatgaatgaaatacc 497  Q
    ||||||||| || || | ||||||| |||||||||||||||||||    
T  55109437 atgaagatgatcacggatggagtctcgagagatgaatgaaatacc 55109393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 200 - 464
Target Start/End: Complemental strand, 17403807 - 17403541
Alignment:
Q  200 ctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaa 299  Q
    |||||| ||||| | |||||||  |||||| ||||||||||  ||||||||||||||||  ||||| ||  ||||| | |||| ||| |||||||| | |    
T  17403807 ctactccataacccccatacaagctaaagggtgccgccatcagtcattataactgaaagctgaagttagtctattaacctttagccaagaaaaagaaaca 17403708  T
Q  300 aactttacattgtttaataattggaccaaattccgagctttgttttt--aaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcaga 397  Q
    ||||||||| ||| |||||| ||   ||||| || ||||| ||||||  ||||| |||||||||||||||| |||||  ||||||||||||| || ||||    
T  17403707 aactttacagtgtctaataactgtgacaaatcccaagcttcgtttttaaaaatcctgttgtttctttccttccaaactgtccaaacacaagcctgccaga 17403608  T
Q  398 tcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtc 464  Q
    | ||||||| ||||  || ||||   |  |||||||||| |||||| ||||| ||||||| ||||||    
T  17403607 taactttgaagaaagaatttgtacctctcggtaaccccgccatgtggccaaattgatgaaaatggtc 17403541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 373
Target Start/End: Complemental strand, 19145611 - 19145443
Alignment:
Q  209 aacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtg--gaagtgagcatattagcatttaaccatgaaaaagacaaaaacttta 306  Q
    ||||| |||||| | |||||| |||||||| |  ||||||||||||||||    ||||||||||  ||||| ||||||||| |||| |||| |||||| |    
T  19145611 aacacccatacataataaagggtgccgccaccagtcattataactgaaagcacagaagtgagcagcttagcttttaaccataaaaatgacataaacttga 19145512  T
Q  307 cattgtttaataattggaccaaattccgagctttgtttttaaa--tcatgttgtttctttcctttcaaa 373  Q
    |||  | |||||| |  ||||||||| ||||| |||| |||||  ||||||||||||||||||| ||||    
T  19145511 cataatctaataacttaaccaaattcggagctgtgttcttaaaaatcatgttgtttctttccttccaaa 19145443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 5475286 - 5475400
Alignment:
Q  195 gaaagctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaag 294  Q
    |||| ||||||  |||||| || ||| | |||||| | |||||| ||  |||| |||| ||||| |||||||||||| ||||| |||||||| | ||| |    
T  5475286 gaaaactactccctaacacccaaacatactaaagggttccgccacccgccattgtaaccgaaagcggaagtgagcatcttagcttttaaccaagtaaacg 5475385  T
Q  295 acaaaaactttacat 309  Q
    |||||||||||||||    
T  5475386 acaaaaactttacat 5475400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 461
Target Start/End: Original strand, 20370191 - 20370305
Alignment:
Q  347 aaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgacc 446  Q
    |||| |||||||| |||||||| |||| || ||| ||||||||| | ||||| | ||| ||||||  || |||||| || ||||||||||  || || ||    
T  20370191 aaattatgttgttcctttccttccaaataacccagacacaagcaagccagattattttcaggaaagaatgtgtaaatcgcggtaaccccgctatatggcc 20370290  T
Q  447 aaactgatgaagatg 461  Q
    |||||||||||||||    
T  20370291 aaactgatgaagatg 20370305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 4119336 - 4119420
Alignment:
Q  347 aaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaa 431  Q
    |||||||||||||  ||||||| |||||||  |||||||||||||||||| | ||||  | |||| |||||||||| || |||||    
T  4119336 aaatcatgttgttcatttccttccaaacaactcaaacacaagcatgtcagtttacttaaacgaaaggatatgtaaatcgcggtaa 4119420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 312
Target Start/End: Complemental strand, 1858352 - 1858249
Alignment:
Q  209 aacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttaca 308  Q
    ||||| ||| |||||||| ||||||||||| |  |||||||||||||| | | ||||| ||| ||| || |||| ||| || ||||||||||| || |||    
T  1858352 aacacccatgcaaagtaatggatgccgccaccagtcattataactgaaggcgaaagtgggcacatttgcctttagccaagagaaagacaaaaatttgaca 1858253  T
Q  309 ttgt 312  Q
    ||||    
T  1858252 ttgt 1858249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 8683982 - 8684021
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgc-aaagagaatcact 162  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  8683982 agtgattcatctcgcacaaggtgtgcaaaagagaatcact 8684021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 22197694 - 22197655
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgc-aaagagaatcact 162  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  22197694 agtgattcatctcgcacaaggtgtgcaaaagagaatcact 22197655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 37113246 - 37113207
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgc-aaagagaatcact 162  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  37113246 agtgattcatctcgcacaaggtgtgcaaaagagaatcact 37113207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 10359097 - 10359056
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgc-aaagagaatcac 161  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  10359097 aagagtgattcatctagcacaaggtgtgcaaaagagaatcac 10359056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 6453570 - 6453542
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgcaaa 152  Q
    |||||||||||||||||||||||||||||    
T  6453570 agtgattcatctcgcacaaggtgtgcaaa 6453542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 17403926 - 17403894
Alignment:
Q  128 attcatctcgcacaaggtgtgcaaagagaatca 160  Q
    |||||||||| ||||||||||||||||||||||    
T  17403926 attcatctcgtacaaggtgtgcaaagagaatca 17403894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 31765739 - 31765695
Alignment:
Q  125 gtgattcatctcgcacaaggtgtgcaaagagaatcactccataaa 169  Q
    ||||||||||| ||||| |||||||||||||| ||||||| ||||    
T  31765739 gtgattcatcttgcacagggtgtgcaaagagattcactccgtaaa 31765695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 39236008 - 39235960
Alignment:
Q  128 attcatctcgcacaaggtgtgcaaagagaatcactccataaaaaataca 176  Q
    ||||||||||||||||  ||||||||| |||| |||| |||||||||||    
T  39236008 attcatctcgcacaagacgtgcaaagaaaatcgctccttaaaaaataca 39235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 489
Target Start/End: Original strand, 3854171 - 3854453
Alignment:
Q  208 taacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttac 307  Q
    |||||| |||||||| |||||| || ||||| |  ||||||||||||||||  ||||||||| |||| ||  ||||||| |||||||| | |||||||||    
T  3854171 taacacccatacaaattaaagggtgtcgccaccagtcattataactgaaagctgaagtgagcttattcgcccttaaccaagaaaaagatacaaactttac 3854270  T
Q  308 attgtttaataattggaccaaattccgagctttgttttt--aaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttg 405  Q
     | || ||||||||| ||||| |   | |||||||||||  ||||| | |||||||||||||| |||||  | ||||| |||||||| ||||||||| ||    
T  3854271 ttcgtctaataattgaaccaagtctagtgctttgttttttaaaatcctattgtttctttccttccaaactgttcaaacgcaagcatgccagatcactctg 3854370  T
Q  406 aggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaat 489  Q
    | ||||  ||   ||||  |||||||||||  ||||||||||||||||  |||||| || ||||| ||||| ||||| ||||||    
T  3854371 aagaaagaatgcttaaattgtggtaacccc-ccatgtgaccaaactgaataagatgctcacgaacagagtcaggagaaatgaat 3854453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 32590677 - 32590782
Alignment:
Q  207 ataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaacttta 306  Q
    ||||||| |||||||| |||||| |||| ||| |  |||||||||||||||| |||||| ||| ||||||| |||||||| | |||||||| ||||||||    
T  32590677 ataacacccatacaaattaaagggtgccaccaccggtcattataactgaaagcggaagttagcctattagcctttaaccaagtaaaagacacaaacttta 32590776  T
Q  307 cattgt 312  Q
    ||||||    
T  32590777 cattgt 32590782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 468
Target Start/End: Complemental strand, 42914088 - 42913815
Alignment:
Q  197 aagctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagac 296  Q
    ||||||||| ||||||  |||||||  |||||| |||||||| |  |||||||| |||||||  ||| | |||||||  || |||| ||| ||||||||     
T  42914088 aagctactccataacatccatacaagttaaagggtgccgccaccagtcattatagctgaaagctgaaatcagcatatgcgcctttagccaagaaaaagaa 42913989  T
Q  297 aaaaactttacattgtttaataattggaccaaattccgagctttgtttttaa--atcatgttgtttctttcctttcaaacaatccaaacacaagcatgtc 394  Q
    | ||||||||||||||||| ||||||   |||||  |  ||||||| |||||  || ||||||||||||||||| ||||   ||||||| |||||||| |    
T  42913988 acaaactttacattgtttattaattgagacaaatctcatgctttgtctttaaatattatgttgtttctttccttccaaagtgtccaaacgcaagcatgcc 42913889  T
Q  395 agatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcga 468  Q
    | || ||||||| ||||  ||  |||   |  |||||||||| |||||||| ||| ||||||  ||||||||||    
T  42913888 atataactttgaagaaagaatgcgtagctctcggtaaccccgccatgtgactaaattgatgagaatggtcgcga 42913815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 373
Target Start/End: Complemental strand, 4694063 - 4693888
Alignment:
Q  200 ctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaa 299  Q
    |||||| ||||||| |||||||  |||||| || ||||| |  ||||||||||||||||  ||||| ||| ||||||| |||| ||| |||||||| | |    
T  4694063 ctactccataacacacatacaagttaaagggtgtcgccaccattcattataactgaaagctgaagttagcctattagcctttagccaagaaaaagaaaca 4693964  T
Q  300 aactttacattgtttaataattggaccaaattccgagctttgttttt--aaatcatgttgtttctttcctttcaaa 373  Q
    ||||||||  ||| |||||||||   |||||  |  |||||| ||||  |||||||||||||||||||||| ||||    
T  4693963 aactttacgatgtctaataattgtgtcaaatctcttgctttgcttttaaaaatcatgttgtttctttccttccaaa 4693888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 28970682 - 28970639
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  28970682 aagagcgattcatctcgcacaaggtgtgcaaagagaatcactcc 28970639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 322
Target Start/End: Complemental strand, 51410987 - 51410865
Alignment:
Q  200 ctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaa 299  Q
    |||||| ||||||| |||||||  |||||| | |||||| |  ||||||||||||||||  ||||| ||| ||||||| |||| ||| |||||||| | |    
T  51410987 ctactccataacacccatacaagttaaagggttccgccaccagtcattataactgaaagctgaagttagcctattagcctttagccaagaaaaagaaaca 51410888  T
Q  300 aactttacattgtttaataattg 322  Q
    || |||||| ||| |||||||||    
T  51410887 aaatttacaatgtctaataattg 51410865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 43912853 - 43912889
Alignment:
Q  128 attcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    |||||||||||||||||||||||||||||||||||||    
T  43912853 attcatctcgcacaaggtgtgcaaagagaatcactcc 43912889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 17541412 - 17541332
Alignment:
Q  217 tacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagaca 297  Q
    |||||||||||||||| ||||| |  ||||||||||| |||| | ||||| ||||||| || |||| ||| ||||||||||    
T  17541412 tacaaagtaaaggatgtcgccaccagtcattataactaaaagcgaaagtgggcatatttgcctttagccaagaaaaagaca 17541332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 51411090 - 51411054
Alignment:
Q  128 attcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    ||||||||||| |||||||||||||||||||||||||    
T  51411090 attcatctcgcgcaaggtgtgcaaagagaatcactcc 51411054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 3854057 - 3854099
Alignment:
Q  122 agagtgattcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||    
T  3854057 agagtaattcatctcgcacaaggtgtgcagagagagtcactcc 3854099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 411
Target Start/End: Original strand, 43913065 - 43913142
Alignment:
Q  336 gctttgttttt--aaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaa 411  Q
    |||||||||||  |||||||||||||||||||||| |||||  ||||||  ||||||||  |||| ||||||| ||||    
T  43913065 gctttgttttttaaaatcatgttgtttctttccttacaaactgtccaaatgcaagcatgcgagataactttgaagaaa 43913142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 27895536 - 27895499
Alignment:
Q  125 gtgattcatctcgcacaaggtgtgc-aaagagaatcac 161  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  27895536 gtgattcatctcgcacaaggtgtgcaaaagagaatcac 27895499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 152
Target Start/End: Original strand, 33799148 - 33799176
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgcaaa 152  Q
    |||||||||||||||||||||||||||||    
T  33799148 agtgattcatctcgcacaaggtgtgcaaa 33799176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 481
Target Start/End: Original strand, 23636711 - 23636998
Alignment:
Q  195 gaaagctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaag 294  Q
    |||| |||||| ||||||| |||||| | |||||| |||  ||| |  || ||||||||||||| |||||||||||||||| | |||| |||| ||||||    
T  23636711 gaaatctactccataacacccatacataataaagggtgcatccaccagtcgttataactgaaagcggaagtgagcatattaacttttagccataaaaaag 23636810  T
Q  295 acaaaaactttacattgtttaataattggaccaaattccgagctttgtttttaaa--tcatgttgtttctttcctttcaaacaatccaaacacaagcatg 392  Q
    ||| ||| || |  |||| |||||| ||| |||||| |    |||||   |||||  |||||| |||||||||||| ||||  | |||||||||||||||    
T  23636811 acataaatttgatgttgtctaataaatggtccaaatacaatactttgcgcttaaaaatcatgt-gtttctttccttccaaagtacccaaacacaagcatg 23636909  T
Q  393 tcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggag 481  Q
      |||| ||||||||||||  ||  ||||| ||||||||||||| ||| ||||||||||| |||||||| || || || ||||||||||    
T  23636910 caagattactttgaggaaagaatgggtaaatcgtggtaaccccgccatatgaccaaactggtgaagatgatcacgtaccgagtctggag 23636998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 208 - 491
Target Start/End: Complemental strand, 6654723 - 6654438
Alignment:
Q  208 taacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttac 307  Q
    |||||| |||||||| ||| ||||| ||||| |  ||||||||||||||||  ||||||||| || | ||  ||||  | ||||||||   |||||||||    
T  6654723 taacacccatacaaattaacggatgtcgccaccagtcattataactgaaagctgaagtgagcctacttgcccttaattaagaaaaagaagcaaactttac 6654624  T
Q  308 attgtttaataattggaccaaattccgagctttgtttttaaa--tcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttg 405  Q
     |||| || |||||| | ||| | | | ||||||||||| ||  || | |||||||||||||| |||||  ||||||| |||||||||||||||||| |     
T  6654623 tttgtctagtaattgaagcaagtccagtgctttgtttttgaagatcctattgtttctttccttccaaactgtccaaacgcaagcatgtcagatcactcta 6654524  T
Q  406 aggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatga 491  Q
    | ||||  || |||||| || ||| ||| || ||||||||||||||||  |||||| || ||||| ||||| ||||| ||||||||    
T  6654523 aagaaagaatgtgtaaatcgcggtgacctcgccatgtgaccaaactgaataagatgctcacgaacagagtcaggagaaatgaatga 6654438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 208 - 491
Target Start/End: Complemental strand, 6735125 - 6734840
Alignment:
Q  208 taacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttac 307  Q
    |||||| |||||||| ||| ||||| ||||| |  ||||||||||||||||  ||||||||| || ||||  ||||  | ||||||||   |||||||||    
T  6735125 taacacccatacaaattaacggatgtcgccaccagtcattataactgaaagctgaagtgagcctactagcccttaaataagaaaaagaagcaaactttac 6735026  T
Q  308 attgtttaataattggaccaaattccgagctttgtttttaaa--tcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttg 405  Q
     |||| || |||||| | ||| | | | ||||||||||| ||  || | |||||||||||||| |||||  ||||||| |||||||||||||||||| |     
T  6735025 tttgtctagtaattgaagcaagtccagtgctttgtttttgaagatcctattgtttctttccttccaaactgtccaaacgcaagcatgtcagatcactcta 6734926  T
Q  406 aggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatga 491  Q
    | ||||  || |||||| || ||| ||| || ||||||||||||||||  |||||| || | ||| ||||| ||||| ||||||||    
T  6734925 aagaaagaatgtgtaaatcgaggtgacctcgccatgtgaccaaactgaataagatgctcacaaacagagtcaggagaaatgaatga 6734840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 410
Target Start/End: Original strand, 28211146 - 28211364
Alignment:
Q  195 gaaagctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaag 294  Q
    |||| ||||||  |||||| | |||| | |||||||||||||||||  ||||||||||||||||  |||||||||    |||| ||||||||| ||||||    
T  28211146 gaaaactactccctaacacacgtacataataaaggatgccgccatcagtcattataactgaaagcagaagtgagcgacctagcttttaaccataaaaaag 28211245  T
Q  295 acaaaaactttacattgtttaataattggaccaaattccgagctttgttttt---aaatcatgttgtttctttcctttcaaacaatccaaacacaagcat 391  Q
    ||| |||||| || | || |||||| | ||||||||   ||||||| ||| |   |||||||||||||| ||||||| |||  ||||||||||| |||||    
T  28211246 acataaacttgacgtagtctaataacttgaccaaatcatgagctttttttgttaaaaatcatgttgtttatttccttccaattaatccaaacactagcat 28211345  T
Q  392 gtcagatcactttgaggaa 410  Q
    |  || |||||||||||||    
T  28211346 gctaggtcactttgaggaa 28211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 30702412 - 30702523
Alignment:
Q  201 tactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaa 300  Q
    ||||| ||||||| |||||||| |||||| |||||||| |  |||||||||||||||| |||||| ||| ||||||| ||||| || |||||||||| ||    
T  30702412 tactccataacacccatacaaattaaagggtgccgccaccagtcattataactgaaagcggaagttagcctattagcctttaatcaagaaaaagacacaa 30702511  T
Q  301 actttacattgt 312  Q
    ||||||||||||    
T  30702512 actttacattgt 30702523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 491
Target Start/End: Complemental strand, 6744461 - 6744176
Alignment:
Q  208 taacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttac 307  Q
    |||||| |||||||| ||| || || ||||| |  ||||||||||||||||  ||||||||| || | ||  ||||| | ||||||||   |||||||||    
T  6744461 taacacccatacaaattaacgggtgtcgccaccagtcattataactgaaagctgaagtgagcctactcgcccttaactaagaaaaagaagcaaactttac 6744362  T
Q  308 attgtttaataattggaccaaattccgagctttgtttttaaa--tcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttg 405  Q
     |||| || |||||| | ||| | | | ||||||||||| ||  || | |||||||||||||| |||||  ||||||| |||||||||| ||||||| |     
T  6744361 tttgtctagtaattgaagcaagtccagtgctttgtttttgaagatcctattgtttctttccttccaaactgtccaaacgcaagcatgtccgatcactcta 6744262  T
Q  406 aggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctggagagatgaatga 491  Q
    | ||||  || |||||| |||||| ||| || ||||||||||||||||  |||||| || | ||| ||||| ||||| ||||||||    
T  6744261 aagaaagaatgtgtaaatcgtggtgacctcgccatgtgaccaaactgaataagatgctcacaaacagagtcaggagaaatgaatga 6744176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 18004484 - 18004595
Alignment:
Q  201 tactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaa 300  Q
    ||||| ||||||| |||||||| |||||| |||||||| |  ||||||||| ||||||  ||||| ||| ||||||| |||||||| |||||||||| ||    
T  18004484 tactccataacacccatacaaattaaagggtgccgccaccggtcattataattgaaagctgaagttagcctattagcctttaaccaagaaaaagacacaa 18004583  T
Q  301 actttacattgt 312  Q
    ||||||||||||    
T  18004584 actttacattgt 18004595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 201 - 312
Target Start/End: Complemental strand, 30288553 - 30288442
Alignment:
Q  201 tactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaa 300  Q
    ||||| ||||||| |||||||| |||||| |||||||| || ||||||||||||||||  ||||| ||| ||||||| |||||| | ||||| |||| ||    
T  30288553 tactccataacacccatacaaattaaagggtgccgccacccgtcattataactgaaagctgaagttagcctattagcctttaacgaagaaaatgacacaa 30288454  T
Q  301 actttacattgt 312  Q
    |  |||||||||    
T  30288453 atattacattgt 30288442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 448
Target Start/End: Complemental strand, 30288399 - 30288304
Alignment:
Q  353 tgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaa 448  Q
    |||||||||||||||| ||||| ||||||||||||||||| || ||||| || |  |||  ||  ||||| || |||||||||| |||||||||||    
T  30288399 tgttgtttctttccttccaaacgatccaaacacaagcatgccatatcaccttaaaaaaagaatgagtaaatcgcggtaaccccgccatgtgaccaa 30288304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 373
Target Start/End: Original strand, 44097400 - 44097532
Alignment:
Q  243 tcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttacattgtttaataattggaccaaattccgagctttgt 342  Q
    ||||| ||||||||||| | || |||||  ||||| ||||||||||||||||||| |||||| |||| ||  ||||| | || |||||   |||||||||    
T  44097400 tcattgtaactgaaagtagtagagagcaatttagcttttaaccatgaaaaagacataaacttgacatagtcgaataacttgatcaaatcatgagctttgt 44097499  T
Q  343 tttt--aaatcatgttgtttctttcctttcaaa 373  Q
    || |  ||||| ||||||||| |||||| ||||    
T  44097500 ttgtaaaaatcttgttgtttcgttccttccaaa 44097532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 27420368 - 27420407
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgc-aaagagaatcact 162  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  27420368 agtgattcatctcgcacaaggtgtgcaaaagagaatcact 27420407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 6654829 - 6654795
Alignment:
Q  130 tcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    ||||||||||||||||||||||||||| |||||||    
T  6654829 tcatctcgcacaaggtgtgcaaagagagtcactcc 6654795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 6735231 - 6735197
Alignment:
Q  130 tcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    ||||||||||||||||||||||||||| |||||||    
T  6735231 tcatctcgcacaaggtgtgcaaagagagtcactcc 6735197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 455
Target Start/End: Original strand, 18004638 - 18004740
Alignment:
Q  353 tgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactg 452  Q
    |||||||||||||||| ||||||||| |||  || ||||| |||||||| ||||  |||  ||  ||||| ||  ||||||||| ||| |||||||||||    
T  18004638 tgttgtttctttccttccaaacaatctaaatgcatgcatgccagatcaccttgaaaaaagaatgagtaaatcgcagtaaccccgccatatgaccaaactg 18004737  T
Q  453 atg 455  Q
    |||    
T  18004738 atg 18004740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 23556069 - 23556105
Alignment:
Q  126 tgattcatctcgcacaaggtgtgcaa-agagaatcac 161  Q
    |||||||||||||||||||||||||| ||||||||||    
T  23556069 tgattcatctcgcacaaggtgtgcaatagagaatcac 23556105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 42747307 - 42747271
Alignment:
Q  126 tgattcatctcgcacaaggtgtgc-aaagagaatcac 161  Q
    |||||||||||||||||||||||| ||||||||||||    
T  42747307 tgattcatctcgcacaaggtgtgcaaaagagaatcac 42747271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 422
Target Start/End: Original strand, 42266161 - 42266377
Alignment:
Q  208 taacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttac 307  Q
    |||||| ||||||||||||||| |||||||| |  || ||||||||||||| ||||||| |||||||||| ||||||||| ||||||||| ||| || ||    
T  42266161 taacacccatacaaagtaaagggtgccgccaccggtcgttataactgaaagcggaagtgggcatattagcttttaaccataaaaaagacataaatttaac 42266260  T
Q  308 attgtttaataattggaccaaattccgagcttt--gtttttaaatcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttg 405  Q
    | | |  ||||||| |   |||| |  ||||||  | ||  |||||  | ||||||||||||| ||||||| ||||||||||||||| ||||| |||||     
T  42266261 actatccaataatttgcataaatccgcagctttccgcttgaaaatctcgctgtttctttccttccaaacaacccaaacacaagcatgccagattacttta 42266360  T
Q  406 aggaaatgatatgtaaa 422  Q
    |||||| ||| ||||||    
T  42266361 aggaaaggatgtgtaaa 42266377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 411
Target Start/End: Complemental strand, 13451338 - 13451121
Alignment:
Q  195 gaaagctactctataacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaag 294  Q
    ||||||||||||  ||||| |||||| | ||||||||||||||| |  ||||||||||| ||||  ||||||||||  ||||| |||||||| |||||||    
T  13451338 gaaagctactcttcaacacccatacataataaaggatgccgccaccagtcattataactaaaaggagaagtgagcaacttagcttttaaccaagaaaaag 13451239  T
Q  295 acaaaaactttacattgtttaataattggaccaaattccgagctttg--tttttaaatcatgttgtttctttcctttcaaacaatccaaacacaagcatg 392  Q
    ||| |||||| ||  ||| |||||| || ||||||| | ||||||||  |||  ||| | | |||||||||||||| |||| || ||| |||||||  |     
T  13451238 acataaacttaacggtgtctaataactgaaccaaatcctgagctttgcctttgaaaaccctattgtttctttccttgcaaa-aaaccatacacaagtgtt 13451140  T
Q  393 tcagatcactttgaggaaa 411  Q
     || |||||||||||||||    
T  13451139 ccaaatcactttgaggaaa 13451121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 479
Target Start/End: Complemental strand, 923964 - 923691
Alignment:
Q  208 taacactcatacaaagtaaaggatgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttac 307  Q
    |||||||||| ||| ||||| | |||||||| |  |||||||||||||||| | | ||||||||||| || |||| |||| ||||||||| | | || ||    
T  923964 taacactcatgcaacgtaaaaggtgccgccaccggtcattataactgaaagcgaatgtgagcatattggcctttatccataaaaaagacatacaattgac 923865  T
Q  308 attgtttaataattggaccaaattccgagctttgtttttaaa--tcatgttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttg 405  Q
    ||||| |   |  ||  |||||| |  |||||| |  |||||  |||||||||| |||| ||| |||| || ||| ||||||||||| ||| | |||||     
T  923864 attgtctgtcagatgatccaaatccaaagctttctacttaaaaatcatgttgttcctttacttccaaataacccagacacaagcatgccaggttactttc 923765  T
Q  406 aggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagtctgg 479  Q
    || |||  || |||||| ||||||||||||| ||| |||||||||||||||| ||| ||| |||  ||||||||    
T  923764 agaaaagaatgtgtaaatcgtggtaaccccgccatatgaccaaactgatgaacatgatcgtgaagcgagtctgg 923691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 355 - 470
Target Start/End: Complemental strand, 38432761 - 38432646
Alignment:
Q  355 ttgtttctttcctttcaaacaatccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgat 454  Q
    |||||||||||||| |||||  ||||||  |||||||| ||||||||| || |||||  || |||||| || |||||||||| ||||||||||||||||     
T  38432761 ttgtttctttccttccaaactgtccaaatgcaagcatgccagatcactatggggaaagaatgtgtaaatcgcggtaaccccgccatgtgaccaaactgaa 38432662  T
Q  455 gaagatggtcgcgaac 470  Q
     |||||| || |||||    
T  38432661 taagatgctcacgaac 38432646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 9600371 - 9600444
Alignment:
Q  231 tgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactt 304  Q
    |||||||| | |||| |||||||||||| |||||||||||| ||||| || ||||| | |||||||||||||||    
T  9600371 tgccgccaccaatcagtataactgaaagcggaagtgagcattttagctttcaaccaagcaaaagacaaaaactt 9600444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 9827942 - 9828015
Alignment:
Q  231 tgccgccatccatcattataactgaaagtggaagtgagcatattagcatttaaccatgaaaaagacaaaaactt 304  Q
    |||||||| | |||| |||||||||||| |||||||||||| ||||| || ||||| | |||||||||||||||    
T  9827942 tgccgccaccaatcagtataactgaaagcggaagtgagcattttagctttcaaccaagcaaaagacaaaaactt 9828015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 475
Target Start/End: Complemental strand, 29672888 - 29672791
Alignment:
Q  378 ccaaacacaagcatgtcagatcactttgaggaaatgatatgtaaaacgtggtaaccccgtcatgtgaccaaactgatgaagatggtcgcgaacggagt 475  Q
    |||||||||||||||||| || ||||| |||||| |||||||||| || | |||||||||||  || || || ||||||||||| || ||||| ||||    
T  29672888 ccaaacacaagcatgtcatattactttaaggaaaggatatgtaaatcgcgataaccccgtcaaatgtccgaattgatgaagatgatcacgaactgagt 29672791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 34148399 - 34148442
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  34148399 aagagcgattcatctcgcacaaggtgtgcaaagagaattactcc 34148442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 34178725 - 34178682
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaagagaatcactcc 164  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  34178725 aagagcgattcatctcgcacaaggtgtgcaaagagaattactcc 34178682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 7282561 - 7282600
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgc-aaagagaatcact 162  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  7282561 agtgattcatctcgcacaaggtgtgcaaaagagaatcact 7282600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 9604264 - 9604295
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaa 152  Q
    ||||||||||||||||||||||||||||||||    
T  9604264 aagagtgattcatctcgcacaaggtgtgcaaa 9604295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 9831835 - 9831866
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaa 152  Q
    ||||||||||||||||||||||||||||||||    
T  9831835 aagagtgattcatctcgcacaaggtgtgcaaa 9831866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 44521503 - 44521542
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgc-aaagagaatcact 162  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  44521503 agtgattcatctcgcacaaggtgtgcaaaagagaatcact 44521542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 10427868 - 10427830
Alignment:
Q  124 agtgattcatctcgcacaaggtgtgc-aaagagaatcac 161  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  10427868 agtgattcatctcgcacaaggtgtgcaaaagagaatcac 10427830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 3940945 - 3940989
Alignment:
Q  108 ataataaatgatgaagagtgattcatctcgcacaaggtgtgcaaa 152  Q
    ||||||||| |  ||||||| ||||||||||||||||||||||||    
T  3940945 ataataaatcaccaagagtgtttcatctcgcacaaggtgtgcaaa 3940989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1951 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 477 - 518
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgc-aaagagaatcac 161  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  477 aagagtgattcatctcgcacaaggtgtgcaaaagagaatcac 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 1956 - 1920
Alignment:
Q  121 aagagtgattcatctcgcacaaggtgtgcaaagagaa 157  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  1956 aagagagattcatctcgcacaaggtgtgcagagagaa 1920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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