View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8582_low_5 (Length: 463)
Name: NF8582_low_5
Description: NF8582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8582_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 35956553 - 35956973
Alignment:
| Q |
20 |
cagtacaataactctagtgagatactgaagcaaatgcaaaatcaaggttgtcccatacctacctcaaatgtgcgatggactttccctccacccggctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35956553 |
cagtacaataactctagtgagatactgatgcaaatgcaaaatcaaggttgtcacatacctacttcaaatgtgcgatggactttccctccacctggctggt |
35956652 |
T |
|
| Q |
120 |
ataaactcaacaccagtgcagctggacagaatggggatggaacttggggactgtcggcgattgttagggactctgagggtgttgttgttgctgcagcatg |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35956653 |
ataaactcaacaccgatgcagctggacagaatggggatggaacttggggactgtcagcggttgttagggactctgagggtgttgttgttgctgcagcatg |
35956752 |
T |
|
| Q |
220 |
tatgaaaacaccaattctcccaaattcagatatggttgaagctatggagatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaatt |
319 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || ||| |
|
|
| T |
35956753 |
ttggaaaacaccaattctgccaaattcagatatggctgaagctatggcgatgaaaaaaggtgtggaattcgcaaagtatatgttatttttgaacgtgatt |
35956852 |
T |
|
| Q |
320 |
gttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaatcgcctctttcacacatgggtaccattgttgatgattgtagacttttagctt |
419 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35956853 |
gttgaatctgattcacaaaatgtgatatctgttgtcacagatgctcaatcgcctctttcatacatggctaccattgttgatgattgtagacttttagctt |
35956952 |
T |
|
| Q |
420 |
gtcattttcaaaatttacaat |
440 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
35956953 |
gtcattttcaaattttacaat |
35956973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 26887158 - 26886739
Alignment:
| Q |
20 |
cagtacaataactctagtgagatactgaagcaaatgcaaaatcaaggttgtcccatacctacctcaaatgtgcgatggactttccctccacccggctggt |
119 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||| || |||| |
|
|
| T |
26887158 |
cagtacaataattctagtgagatactgatgcaagtgcagaatcaaggttgtcccatacctacatcaaatgtacgatggacggtccctccacctggttggt |
26887059 |
T |
|
| Q |
120 |
ataaactcaacaccagtgcagctggacagaatggggatggaacttggggactgtcggcgattgttagggactctgagggtgttgttgttgctgcagcatg |
219 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||| ||||||||| ||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26887058 |
ataaaatcaacaccgatgcagctagacagaatgaggatggaacatggggaccgtcagcaattgttagggactctaagggtgttgttgttgctgcagcatg |
26886959 |
T |
|
| Q |
220 |
tatgaaaacaccaattctcccaaattcagatatggttgaagctatggagatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaatt |
319 |
Q |
| |
|
| ||||||| | ||||| |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
26886958 |
ttggaaaacaacgattcttccaaattcagatatggctgaagctatggcgatg-aaaaaggtgtggaattcgcaaaggatatgttatttttgaacgtgatt |
26886860 |
T |
|
| Q |
320 |
gttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaatcgcctctttcacacatgggtaccattgttgatgattgtagacttttagctt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | | | |||| ||||||||| ||||||||||||||||||||||||||| ||| ||||| | |
|
|
| T |
26886859 |
gttgaatctgattcgcaaaatgtgatatctgctgtcacagttacccaatcacctctttcatacatgggtaccattgttgatgattgtaaactcttagcat |
26886760 |
T |
|
| Q |
420 |
gtcattttcaaaatttacaat |
440 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26886759 |
gtcattttcaaaatttacaat |
26886739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 438
Target Start/End: Original strand, 9753124 - 9753546
Alignment:
| Q |
20 |
cagtacaataactctagtgagatactgaagcaaatgcaaaatcaaggttgtcccatacctacct----caaatgtgcgatggactttccctccacccggc |
115 |
Q |
| |
|
||||||||||| || |||||||||| || |||| |||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
9753124 |
cagtacaataattccagtgagatacagatgcaagtgcaaaatcaaggttgtcccatacatacgtacatcaaatgtgcgatggactgtccctccacccggc |
9753223 |
T |
|
| Q |
116 |
tggtataaactcaacaccagtgcagctggacagaatggggatggaacttggggactgtcggcgattgttagggactctgagggtgttgttgttgctgcag |
215 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
9753224 |
tggtataaactcaacaccaatgcagctagacagaaggaggatggaacatggggactgtcggcgattgttagggactttgagggtgttgttgttgccacaa |
9753323 |
T |
|
| Q |
216 |
catgtatgaaaacaccaattctcccaaattcagatatggttgaagctatggagatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgt |
315 |
Q |
| |
|
||||| ||||||| | ||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9753324 |
catgttggaaaacatcgattctgacaaattctgatatggttgaagctatggcgatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaacgt |
9753423 |
T |
|
| Q |
316 |
aattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaatcgcctctttcacacatgggtaccattgttgatgattgtagactttta |
415 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | |||||||||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9753424 |
gcttgttgaatccgattcgcaaaatgtgatatcgggtgtcacggattcccaatcgcctctttcatacatgggtaacattgttgatgattgtagactttta |
9753523 |
T |
|
| Q |
416 |
gcttgtcattttcaaaatttaca |
438 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
9753524 |
gtttgtcattttcaaaatttaca |
9753546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 65 - 440
Target Start/End: Complemental strand, 44077750 - 44077375
Alignment:
| Q |
65 |
ggttgtcccatacctacctcaaatgtgcgatggactttccctccacccggctggtataaactcaacaccagtgcagctggacagaatggggatggaactt |
164 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| | |
|
|
| T |
44077750 |
ggttgtcccatgcctacttcaaatgtgtgatggactgtccttccacccggctggtatgaactcaacaccgatgcagctggacagaatgaggatggaacat |
44077651 |
T |
|
| Q |
165 |
ggggactgtcggcgattgttagggactctgagggtgttgttgttgctgcagcatgtatgaaaacaccaattctcccaaattcagatatggttgaagctat |
264 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||| ||||||||| | ||||||| ||||| || |||| |||||||| ||||||||| |
|
|
| T |
44077650 |
ggggactgtcgacgattgttagagactctgagggtgttgttgttgtcgcagcatgttgggaaacaccgattctaccgaatttagatatggctgaagctat |
44077551 |
T |
|
| Q |
265 |
ggagatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgct |
364 |
Q |
| |
|
|| |||||||||| || ||||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
44077550 |
ggtgatgaaaaaatgtatggaattcgcaaaggatatgtaatttttgaaattgattgttgaatcttattcgcaaaatgtgatatctgctgtcacagatgcc |
44077451 |
T |
|
| Q |
365 |
taatcgcctctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaat |
440 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44077450 |
caatcgtctctttcctacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaat |
44077375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 32159490 - 32159071
Alignment:
| Q |
20 |
cagtacaataactctagtgagatactgaagcaaatgcaaaatcaaggttgtcccatacctacctcaaatgtgcgatggactttccctccacccggctggt |
119 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||| |||||| | |||||||||| ||||||| |
|
|
| T |
32159490 |
cagtacaataattctagtgagatactgctgcaaatgcaaaatcaaggttgcctcatacctacttcaaatgtgtgatggattgtccctccacc-ggctggt |
32159392 |
T |
|
| Q |
120 |
ataaactcaacaccagtgcagctggacagaatggggatggaacttggggactgtcggcgattgttagggactctgagggtgttgttgttgctgcagcatg |
219 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| | ||| |||| |
|
|
| T |
32159391 |
ataaactcaacaccgatgcagttggacaaaatgaggatggaacatggggactgtcagcgattgttagagactctgagggtgttgttgttcccgcaacatg |
32159292 |
T |
|
| Q |
220 |
tatgaaaacaccaattctcccaaattcagatatggttgaagctatggagatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaatt |
319 |
Q |
| |
|
| || |||||| ||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
32159291 |
ttggagaacaccgattctgccaaattcagatatggctgaagctatgacaatgaaaaaaggtatggaattcgcaaaggatatgttatttttgaaagtgatt |
32159192 |
T |
|
| Q |
320 |
gttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaatcgcctctttcacacatgggtaccattgttgatgattgtagacttttagctt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||| |||||| ||||||| ||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
32159191 |
attgaatctgattcgcaaaatgtgatatctgctttcacggatgcccaatcgcttctttcatacatgtgtaccattgtcgatgattgtagacttttagctt |
32159092 |
T |
|
| Q |
420 |
gtcattttcaaaatttacaat |
440 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32159091 |
gtcattttcaaaatttacaat |
32159071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 193 - 440
Target Start/End: Complemental strand, 17091418 - 17091171
Alignment:
| Q |
193 |
tgagggtgttgttgttgctgcagcatgtatgaaaacaccaattctcccaaattcagatatggttgaagctatggagatgaaaaaaggtgtggaattcgca |
292 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17091418 |
tgagggtgttgttgttgctgcagcatgttggaaaataccaattctcccaaattcagatatggttgaagctatggcgatgaaaaaaggtgtggaattcgca |
17091319 |
T |
|
| Q |
293 |
aaggatatgttatttttgaatgtaattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaatcgcctctttcacacatgggtacca |
392 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
17091318 |
aaggatatgttatttttgaacgtgattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgctcaatcacctctttcatacatgggtacca |
17091219 |
T |
|
| Q |
393 |
ttgttgatgattgtagacttttagcttgtcattttcaaaatttacaat |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17091218 |
ttgttgatgattgtagacttttagcttgtcattttcaaaatttacaat |
17091171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 17091558 - 17091421
Alignment:
| Q |
20 |
cagtacaataactctagtgagatactgaagcaaatgcaaaatcaaggttgtcccatacctacctcaaatgtgcgatggactttccctccacccggctggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || |
|
|
| T |
17091558 |
cagtacaataactctagtgagatactgatgcaaatgcaaaagcaaggttgtcccatacctacctcaaatgtgcgatgaactttgcctccacccggctagt |
17091459 |
T |
|
| Q |
120 |
ataaactcaacaccagtgcagctggacagaatggggat |
157 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17091458 |
ataaactcaacactgatgcagctggacagaatggggat |
17091421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 62 - 440
Target Start/End: Complemental strand, 52326954 - 52326590
Alignment:
| Q |
62 |
caaggttgtcccatacctacctcaaatgtgcgatggactttccctccacccggctggtataaactcaacaccagtgcagctggacagaatggggatggaa |
161 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||| |||| || ||||||||| |||||||| |
|
|
| T |
52326954 |
caaggttgtctcgtacctacttcaaatgtgcgatgaactttccctccacctggctggtacaaactcaacaccaatgcaactagacagaatgaggatggaa |
52326855 |
T |
|
| Q |
162 |
cttggggactgtcggcgattgttagggactctgagggtgttgttgttgctgcagcatgtatgaaaacaccaattctcccaaattcagatatggttgaagc |
261 |
Q |
| |
|
| |||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||| ||||||| ||||| | ||||||||| |||||| |||||| |
|
|
| T |
52326854 |
catggggactgtcgacgattgttagagactctgagggtgttgttgttgctacagtatgttggaaaacatcaattttaccaaattcaaatatggctgaagc |
52326755 |
T |
|
| Q |
262 |
tatggagatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaattgttgaatctgattcgcaaaatgtgatatctgttgtcacggat |
361 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||| |||||| || |
|
|
| T |
52326754 |
aatgacgatgaaaaaa-gtgtggaattcgcaaaggatacgttattcttgaacatgattgttgaatctgattcgcaaaatatgatatttg----------- |
52326667 |
T |
|
| Q |
362 |
gcttaatcgcctctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaat |
440 |
Q |
| |
|
||||| ||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
52326666 |
--ctaatcacctatttcatacatgggtaccattgttgatgattttagacttttaacttgtcatttttaaaatttacaat |
52326590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 330 - 440
Target Start/End: Original strand, 54865121 - 54865230
Alignment:
| Q |
330 |
attcgcaaaatgtgatatctgttgtcacggatgcttaatcgcctctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttca |
429 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54865121 |
attcacaaaatgtgatatctccagtcctggatgctcaatcgcctctttcatacatgg-taccattgttgatgattgtagacttttaacttgtcattttca |
54865219 |
T |
|
| Q |
430 |
aaatttacaat |
440 |
Q |
| |
|
||||||||||| |
|
|
| T |
54865220 |
aaatttacaat |
54865230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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