View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8582_low_6 (Length: 445)

Name: NF8582_low_6
Description: NF8582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8582_low_6
NF8582_low_6
[»] chr3 (5 HSPs)
chr3 (17-269)||(28572499-28572769)
chr3 (266-445)||(28564388-28564582)
chr3 (336-445)||(28589646-28589760)
chr3 (186-221)||(28565664-28565699)
chr3 (228-258)||(28565959-28565989)
[»] scaffold0889 (1 HSPs)
scaffold0889 (70-222)||(58-218)
[»] scaffold0870 (1 HSPs)
scaffold0870 (70-222)||(262-422)
[»] scaffold1983 (2 HSPs)
scaffold1983 (67-183)||(923-1048)
scaffold1983 (17-65)||(772-820)
[»] chr6 (2 HSPs)
chr6 (82-179)||(24065231-24065337)
chr6 (175-221)||(24069305-24069351)
[»] chr2 (1 HSPs)
chr2 (73-143)||(28960530-28960599)
[»] scaffold1033 (1 HSPs)
scaffold1033 (155-195)||(416-456)
[»] scaffold1029 (1 HSPs)
scaffold1029 (155-195)||(416-456)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 28572499 - 28572769
Alignment:
Q  17 acatcataggagaagaaacatccgctctcattatcggtccctcactttcccttatttttctcatgattacttttctttatcatcttactgctaccactgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  28572499 acatcataggagaagaaacatccgctctcattatcggtccctcactttcccttatttttgtcatgattacttttctttatcatcttactcctaccactgt 28572598  T
Q  117 gatattaaaaaagcattgttgatggtt---------gttaaataaattggcaccatttaggcattttccttcataagttagtaatgcatcttcagcttat 207  Q
    |||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28572599 gatattaaaaaagcattgttgatggttcttcgtgacgttaaataaattggcaccatttaggcattttccttcataagttagtaatgcatcttcaacttat 28572698  T
Q  208 tactagtgccctgaataat---------aattggtttccttcttctagatgaattcttatatgtatctatt 269  Q
    |||||||||||||||||||         |||||||||||||||||||||||||||||||||||||| ||||    
T  28572699 tactagtgccctgaataataccttttagaattggtttccttcttctagatgaattcttatatgtatatatt 28572769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 266 - 445
Target Start/End: Original strand, 28564388 - 28564582
Alignment:
Q  266 tatttagctagcaatgtatcgttgattattcagaaacaggggagatattgactgtctcggctgtgtcaat---------------cagaaagctttgctc 350  Q
    |||||||||||||||||||||||||||||||| || |||||||||| |||| ||||| ||||| ||||||               || | ||| ||||||    
T  28564388 tatttagctagcaatgtatcgttgattattcaaaaccaggggagatcttgattgtcttggctgggtcaatgtcttgaaatgttgccacagagccttgctc 28564487  T
Q  351 tatcaggattagtaactgctctatgcacacatcactttttcatttgttataatctggtgacaaagtaaaccaaccttgttaacaacttcaatttc 445  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28564488 tatcaggattagtaactgctctatgcacacagcactttttcatttgttataatctggtgacaaagtaaaccaaccttgttaacaacttcaatttc 28564582  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 28589646 - 28589760
Alignment:
Q  336 cagaaagctttgctctatcaggattagtaactgctctatgcacacatcac-----tttttcatttgttataatctggtgacaaagtaaaccaaccttgtt 430  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| | |      ||| ||||||||||||||||| | || | ||||| ||||| |||    
T  28589646 cagagagccttgctctatcaggattagtaactgctctatgcacacagctcctgtactttccatttgttataatctggagccataataaacaaacctagtt 28589745  T
Q  431 aacaacttcaatttc 445  Q
    || ||||||||||||    
T  28589746 aataacttcaatttc 28589760  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 28565664 - 28565699
Alignment:
Q  186 tagtaatgcatcttcagcttattactagtgccctga 221  Q
    ||||||||||||||||||||||||||||| ||||||    
T  28565664 tagtaatgcatcttcagcttattactagtcccctga 28565699  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 258
Target Start/End: Original strand, 28565959 - 28565989
Alignment:
Q  228 attggtttccttcttctagatgaattcttat 258  Q
    |||||||||||||||||||||||||||||||    
T  28565959 attggtttccttcttctagatgaattcttat 28565989  T

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Target: scaffold0889 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0889
Description:

Target: scaffold0889; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 218 - 58
Alignment:
Q  70 atttttctcatgattacttttctttatcatcttactgctaccactgtgatattaaaaaagcattgttgatggttgttaa---------ataaattggcac 160  Q
    ||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||  | |||| | |||          ||||||||||||    
T  218 attttcctcataattactttt-tttatcatcttaccgctaccactgtgatatttaaaaagcattactcatggatcttagtgatcttatataaattggcac 120  T
Q  161 catttaggcattttccttcataagttagtaatgcatcttcagcttattactagtgccctgaa 222  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  119 catttaggcattttccttcataaattagtaatgcatcttcagcttattactagagccctgaa 58  T

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Target: scaffold0870 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 422 - 262
Alignment:
Q  70 atttttctcatgattacttttctttatcatcttactgctaccactgtgatattaaaaaagcattgttgatggttgttaa---------ataaattggcac 160  Q
    ||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||||  | |||| | |||          ||||||||||||    
T  422 attttcctcataattactttt-tttatcatcttaccgctaccactgtgatatttaaaaagcattactcatggatcttagtgatcttatataaattggcac 324  T
Q  161 catttaggcattttccttcataagttagtaatgcatcttcagcttattactagtgccctgaa 222  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  323 catttaggcattttccttcataatttagtaatgcatcttcagcttattactagagccctgaa 262  T

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Target: scaffold1983 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold1983
Description:

Target: scaffold1983; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 923 - 1048
Alignment:
Q  67 cttatttttctcatgattacttttctttatcatcttactgctaccactgtgatattaaaaaagcattgttgatggt------tg---ttaaataaattgg 157  Q
    ||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||||||  |||||||| ||||      ||   |||||||||||||    
T  923 cttatttttctcatgattacttttctttaccaacttacttctatcactgtgatattaaaaacacattgttggtggtacttcatgaccttaaataaattgg 1022  T
Q  158 caccatttaggcattttccttcataa 183  Q
    |  | |||||||||||||||||||||    
T  1023 cctcctttaggcattttccttcataa 1048  T

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Target: scaffold1983; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 772 - 820
Alignment:
Q  17 acatcataggagaagaaacatccgctctcattatcggtccctcactttc 65  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  772 acatcataggagaagaaacatcagctctcattatcggttcctctctttc 820  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 24065231 - 24065337
Alignment:
Q  82 attacttttctttatcatcttactgctaccactgtgatattaaaaaagcattgttgatggt------tg---ttaaataaattggcaccatttaggcatt 172  Q
    |||||||||||| |||| |||||||||| |||||| |||||||||||  ||||||||||||      ||   ||||||||||||||||||||||| ||||    
T  24065231 attacttttcttcatcaacttactgctatcactgtcatattaaaaaaaaattgttgatggtacttcgtgaccttaaataaattggcaccatttagacatt 24065330  T
Q  173 ttccttc 179  Q
    |||||||    
T  24065331 ttccttc 24065337  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 24069305 - 24069351
Alignment:
Q  175 ccttcataagttagtaatgcatcttcagcttattactagtgccctga 221  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  24069305 ccttcataatttagtaatgcatcttcagcttattactagagccctga 24069351  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 28960599 - 28960530
Alignment:
Q  73 tttctcatgattacttttctttatcatcttactgctaccactgtgatattaaaaaagcattgttgatggtt 143  Q
    |||||| |||||||| || ||||||| ||||||||||||||||||||  ||||||||| ||||||||||||    
T  28960599 tttctcctgattactatt-tttatcagcttactgctaccactgtgattataaaaaagctttgttgatggtt 28960530  T

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Target: scaffold1033 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 456 - 416
Alignment:
Q  155 tggcaccatttaggcattttccttcataagttagtaatgca 195  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  456 tggcaccatttaggcattttccttcataatttagtaatgca 416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 456 - 416
Alignment:
Q  155 tggcaccatttaggcattttccttcataagttagtaatgca 195  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  456 tggcaccatttaggcattttccttcataatttagtaatgca 416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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