View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8583_high_2 (Length: 451)
Name: NF8583_high_2
Description: NF8583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8583_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 43260299 - 43260724
Alignment:
| Q |
19 |
atatctacatgttgtaatgttgtgttaagggtacttagtcgtatctaatctgagattatggctcaacacaagcacttgcataagtaatttgttgagattg |
118 |
Q |
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| T |
43260299 |
atatctacatgttgtaatgttgtgttaagggtacttagtcgtatctaatctgagcttatggctcaacacaagcacttgcataagtaatttgttgagattg |
43260398 |
T |
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| Q |
119 |
caaaattaagttaaaaatatttcataattacatgtctttaacttcaaacatgtatgaacaacaaataataacttgtataaaaaagttcaatagtttcatc |
218 |
Q |
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| T |
43260399 |
caaaattaagttaaaaatatttcataattacatgtctttaacttcaaacatgtatgaacaacaagtaataacttgtataaaaaagttcaatagtttcatc |
43260498 |
T |
|
| Q |
219 |
tttaattatgaaagtagattatacataatcataagcgataataaacacttgatcaaaacgttttacttaggcatactctaggttcttaaatcttactcaa |
318 |
Q |
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| T |
43260499 |
tttaattatgaaagtagattataaataatcataagcgataataaacacttgatcaaaacgttttacttaggcatactctaggttcttaaatcttactcaa |
43260598 |
T |
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| Q |
319 |
aaaacatccaccttacaatacttttttcttcaactacaaaggaatttacctgccatccaagtaagaaagactttgctttgatgcaaaccacaattgtcta |
418 |
Q |
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| T |
43260599 |
aaaacatccaccttacaatacttttttcttcaactacaaaggaatttacctgccatccaagtaagaaagactttgctttgatgcaaaccacaattgtcta |
43260698 |
T |
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| Q |
419 |
tttgctccattttgctgaacaccaaa |
444 |
Q |
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| T |
43260699 |
tttgctccattttgctgaacaccaaa |
43260724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 158 - 444
Target Start/End: Original strand, 43256841 - 43257123
Alignment:
| Q |
158 |
aacttcaaacatgtatgaacaacaaataataacttgtataaaaaagttcaatagtttcatctttaattatgaaagtagattatacataatcataagcgat |
257 |
Q |
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|||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |||| |
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| T |
43256841 |
aacttctaacatgtatgaacaacaagtaa---cttgtatagaaaagttcaatagtttcatctttaactatgaaagtagattatccgtaatcataaacgat |
43256937 |
T |
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| Q |
258 |
aataaacacttgatcaaaacgttttacttaggcatactctaggttcttaaatcttactcaaaaaacatccaccttacaatacttttttcttcaactacaa |
357 |
Q |
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| T |
43256938 |
aataaacacttgattaaactgttt-acttaggcatactcaagattcttaaatcttactcacaaaacatccaccttacaacagttttttgttcaactactt |
43257036 |
T |
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| Q |
358 |
aggaatttacctgccatccaagtaagaaagactttgctttgatgcaaaccacaattgtctatttgctccattttgctgaacaccaaa |
444 |
Q |
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| T |
43257037 |
aggaatttacctgccatccaagtaagaaagactttgctttgatgcaaaccacaattgtctatttgcaccacctttctgaacaccaaa |
43257123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 43256702 - 43256805
Alignment:
| Q |
60 |
tatctaatctgagattatggctcaacacaagcacttgcataagtaatttgttgagattgcaaaattaagttaaaaatatttcataattaca-tgtcttta |
158 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| |||||||| |
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| T |
43256702 |
tatctaatctgagcttatgcctcaacacaagcacttgcataagtaatttattgagattgtaaaattaacttaaaaatatttcataattacattgtcttta |
43256801 |
T |
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| Q |
159 |
actt |
162 |
Q |
| |
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|||| |
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| T |
43256802 |
actt |
43256805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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