View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8583_high_4 (Length: 414)
Name: NF8583_high_4
Description: NF8583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8583_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 18389578 - 18389192
Alignment:
| Q |
18 |
catcgggtctaagtggcggtcaaaaggcggggatagtaataggtacacttatggcagctgccatattaggtttcattggaatggtttactggaagcgccg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18389578 |
catcgggtctaagtggcggtcaaaaggcggggatagtaataggtacacttctgggagctgccatattaggtttcattggaatggtttgctggaagcgccg |
18389479 |
T |
|
| Q |
118 |
agttaacactagaagaaaccattatagtgatgctgccagaaacattgaactttgatcttacaaattaaggatttgttttgtcctgaaacattttaatttt |
217 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18389478 |
agttaacattagaagaaaccgttatagtgatgctgccagaaacattgaactttgatcttacaaattaaggatttgttttgtcctgaaacattttaatttt |
18389379 |
T |
|
| Q |
218 |
actttcaaaatgcaaggaaacttcggaaaatggtcgggtgtatgtgnnnnnnnnnaccttttactaatgtgtctgtgttggatatttcacagatgatatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18389378 |
actttcaaaatgcaaggaaacttcggaaaatggtcgggggaatgtgttttttttttccttttactaatgtgtctgtgttgaatatttcacagatgatatt |
18389279 |
T |
|
| Q |
318 |
tgaattctagttcaa----nnnnnnnnnnattgatattaatttattagtttaggtaagaagtcaaataataaattatggtgtttcat |
400 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18389278 |
tgaattctagttcaattttttgttttattattgatattaatttattagtttaggaaagaagtcaaataataaattatggtgtttcat |
18389192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University