View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8583_low_1 (Length: 638)
Name: NF8583_low_1
Description: NF8583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8583_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 11 - 627
Target Start/End: Original strand, 15775049 - 15775675
Alignment:
| Q |
11 |
gacatcaaacttctcaatttttaccaatgttgttttacatattattctcgaagttatc------------caaatgggtagctaggaaaaaatggagatg |
98 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15775049 |
gacatcaaacttctcaatttttatcaatgttgttttacatattattctcgaagttatcaaagactatatccaaatgggtagctaggaaaaaatggagatg |
15775148 |
T |
|
| Q |
99 |
gagacaagcatttatttcattggaaaaatacaaagaacgtctctctttctttattatttagtctcatctcatcattttatagtaatttagttccttctca |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15775149 |
gagacaagcatttattccattggaaaaatacaaagaacgtctctctttccttattatttagtctcatctcatcattttatagtaatttagttccttctca |
15775248 |
T |
|
| Q |
199 |
tacgaaccaagagttcttgaaattacattttatgcttggcatattcaacaaacaataaggattttgaccatatgcttgtttttatctgttttgaaattta |
298 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15775249 |
ttcgaaccaagagttcttgaagttacattttatgcttggcatatttaagaaacaataaagattttgatcatatgcttgtttttatctgttttgaaattta |
15775348 |
T |
|
| Q |
299 |
gtatgctgactcattgaatcatactcatcctttaaccaggaatgatatgtaattaatactcta-tttataatatctgccactgtgatctatgtctcattg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15775349 |
gtatgctgactcattgaatcatactcatcctttaaccaggaatgatctgtaattaatactccattttataatatctgccactgtgatctatgtctcattg |
15775448 |
T |
|
| Q |
398 |
aatggcnnnnnnnaatgagcaatactgctattcctcgcgagagaaatcatcccgagccgatcgcgaaaagtgtttagccaattgaatttgttcattacca |
497 |
Q |
| |
|
|||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15775449 |
aatggctttttttaatgagc---agtgctattcctcgcgagagaaatcatcccgagccgatcgcgaaaagtgtttagccaattgaatttgttcattaccg |
15775545 |
T |
|
| Q |
498 |
gaaaacatgggaggcaatggttacaatttacgaaagatatttagtaaacaaccatttgtgaaatcctcgctagctttgttgtcgctatacctagaaattt |
597 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15775546 |
gaaaacatgggaggcaatgcttacaatttacgaaagatattaagtaaacaaccatttgtgaaatcctcgctagctttgttgtcgctatacctagcaattt |
15775645 |
T |
|
| Q |
598 |
tgctcctttaatatatttgcaattgatgtc |
627 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
15775646 |
tgctcttttaatatatttgcaattgatgtc |
15775675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 44738485 - 44738433
Alignment:
| Q |
461 |
cgaaaagtgtttagccaattgaatttgttcattaccagaaaacatgggaggca |
513 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
44738485 |
cgaaaagtgcttagctaattgaatttggtcattaccgaaaaacatgggaggca |
44738433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University