View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8583_low_11 (Length: 270)
Name: NF8583_low_11
Description: NF8583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8583_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 30233491 - 30233344
Alignment:
| Q |
19 |
ttcactaccatcacaacacaggaagaaaacggcggaaataataaaaatccagtagatactggaaatccnnnnnnnatttgttaaccgttgtggcttctca |
118 |
Q |
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| T |
30233491 |
ttcactaccatcacagcacaggaagaaaatggcggaaataataaaaatcctgtagatactggaaatcctttttctgtttgttaaccgttgtggcttctca |
30233392 |
T |
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| Q |
119 |
ccatcctttgccttgccacccaacgtcttcatcttctttggatgttcc |
166 |
Q |
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| T |
30233391 |
ccatcctttgccttgccacccaacgtcttcatcttctttggatgttcc |
30233344 |
T |
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Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 34044743 - 34044633
Alignment:
| Q |
142 |
cgtcttcatcttctttggatgttccagcttctttaatttcctcttggggtactgccacaactttacttgtagtggagcgagttcctggttcagtgctctc |
241 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34044743 |
cgtcttcattttctttggatgttccagcttctttaatttcctcttggggtactgccgcaactttacttgtagtggagcgagttcctggttcagtgctctc |
34044644 |
T |
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| Q |
242 |
aatctggatgt |
252 |
Q |
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| T |
34044643 |
aatctggatgt |
34044633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 4044849 - 4044959
Alignment:
| Q |
142 |
cgtcttcatcttctttggatgttccagcttctttaatttcctcttggggtactgccacaactttacttgtagtggagcgagttcctggttcagtgctctc |
241 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||| || |||||| ||||||||||| |||||||||||||||| |||||||||||| |
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| T |
4044849 |
cgtcttcatcttcttcggatgttccagcttctttgatttcctcttcagggactgccgtaactttacttgaggtggagcgagttcctgattcagtgctctc |
4044948 |
T |
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| Q |
242 |
aatctggatgt |
252 |
Q |
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| T |
4044949 |
aatctggatgt |
4044959 |
T |
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