View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8583_low_13 (Length: 236)
Name: NF8583_low_13
Description: NF8583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8583_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2489127 - 2488892
Alignment:
| Q |
1 |
acatagagggtctaagctcggaaaaagaaataataacataagagatataaattctcattacatcaaccgctatcaaatgatcaaactaagttggacaaga |
100 |
Q |
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| T |
2489127 |
acatagagggcctaggttcggaaaaagaaacaataatataagggatataaactctcattacatcaaccgctatcaaatgatcaaactaagttggacaaaa |
2489028 |
T |
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| Q |
101 |
ctcataataaacaatatcagaactcaacgagtggacaaaattagctaatgcatttgcatattgattagtttcacggtatgagtgacgaaccacaacttcc |
200 |
Q |
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| T |
2489027 |
ctcataataaacaatataagaacccaacgagtggacaaaattagctaatgcgtttgcatattgattggtttcacggtatgagtgacgaatcacaacctcc |
2488928 |
T |
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| Q |
201 |
cactccaactcaagcaagcgacaaatcttcaccatc |
236 |
Q |
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| T |
2488927 |
cactccaactcaagcaagcgacaaatcttcaccatc |
2488892 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 12622639 - 12622698
Alignment:
| Q |
160 |
attgattagtttcacggtatgagtgacgaaccacaacttcccactccaactcaagcaagc |
219 |
Q |
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| T |
12622639 |
attgattagcttcacggtatgaatgatgaaccacaacctcccactccaattcaagcaagc |
12622698 |
T |
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