View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8583_low_3 (Length: 433)
Name: NF8583_low_3
Description: NF8583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8583_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 52577984 - 52577603
Alignment:
| Q |
16 |
ttctttcaaatttcttccatttaaagttccatatccagttccatttaagcttctcggagatgaagcaaagggttggttagacaccacatacttatcgcat |
115 |
Q |
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| T |
52577984 |
ttctttcaaatttcttccatttaaagttccatatccagttccatttaagcttctcggagatgaagcaaagggttggttagacaccacatacttatcgcat |
52577885 |
T |
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| Q |
116 |
tcaggaaaccttcgcatctcaagagggaataaggtgattaggcatttccaatataaacatcatcttaatatatagtcttttgttcctcccctcaattaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577884 |
tcaggaaaccttcgcatctcaagagggaataaggtgattaggcatttccaatataaacatcatcttaatatatagtcttttgttcctcccctcaattaaa |
52577785 |
T |
|
| Q |
216 |
atgcttgttcgtctagcacatcaaatcaaagcatttttataaaaacaatgtttccaagacttaacagcaacatatatatagtgcagggaaccacatttgt |
315 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577784 |
atgctagttcgtctagcacatcaaatcaaagcatttttataaaaacaatgtttccaagacttaacagcaacatatatatagtgcagggaaccacatttgt |
52577685 |
T |
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| Q |
316 |
gctgcagaagcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttggagaggtaagggtgctc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52577684 |
gctgcagaagcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttcgagaggtaagggtgctc |
52577603 |
T |
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