View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8583_low_6 (Length: 360)

Name: NF8583_low_6
Description: NF8583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8583_low_6
NF8583_low_6
[»] chr5 (2 HSPs)
chr5 (17-345)||(36517473-36517801)
chr5 (178-288)||(11239356-11239466)
[»] chr7 (1 HSPs)
chr7 (175-284)||(39845125-39845234)
[»] scaffold0044 (1 HSPs)
scaffold0044 (194-288)||(43165-43259)
[»] chr4 (2 HSPs)
chr4 (199-288)||(7114967-7115056)
chr4 (196-288)||(38092890-38092982)
[»] chr8 (1 HSPs)
chr8 (177-288)||(27220463-27220574)
[»] chr3 (2 HSPs)
chr3 (175-284)||(1547849-1547958)
chr3 (239-288)||(42773709-42773758)
[»] chr2 (2 HSPs)
chr2 (201-284)||(38785020-38785103)
chr2 (207-269)||(38696368-38696430)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 36517801 - 36517473
Alignment:
Q  17 acatcagcagccacatccaagataaaatgttgtcataacagcagccgaaaatcagtcctacagacgccaaagactgacattacagctgctgcaccagcct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36517801 acatcagcagccacatccaagataaaatgttgtcataacagcagccgaaaatcagtcctacagacgccaaggactgacattacagctgctgcaccagcct 36517702  T
Q  117 tgcagaacagccatcactgccaacaccaaaccaaccacgagttagccaaaacatgaactacctcaacaaacactcacgggagcaccaacaccactcataa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36517701 tgcagaacagccatcactgccaacaccaaaccaaccacgagttagccaaaacacgaactacctcaacaaacactcacgggagcaccaacaccactcataa 36517602  T
Q  217 tacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttcacctcctccactaaccatcgtcacttaaatctgtcatatgtac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36517601 tacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttcacctcctccactaaccatcatcacttaaatctgtcatatgtac 36517502  T
Q  317 tatctctatttttcatcaatgttatttgt 345  Q
    |||||||||||||||||||||||||||||    
T  36517501 tatctctatttttcatcaatgttatttgt 36517473  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 11239356 - 11239466
Alignment:
Q  178 ctcaacaaacactcacgggagcaccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttcacct 277  Q
    |||||||||||||| | ||  |||||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  11239356 ctcaacaaacactcgcagggacaccaacaccactcgtaatacatgcaagccggcacattaaatcttcctaacacccacctccaagacaaaaccttcacct 11239455  T
Q  278 cctccactaac 288  Q
    |||||||||||    
T  11239456 cctccactaac 11239466  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 39845234 - 39845125
Alignment:
Q  175 tacctcaacaaacactcacgggagcaccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttca 274  Q
    |||||||||||||| || |||| |||||||| ||| |||||| ||||||| ||||| ||||| ||||| ||||| | | ||||||||||||  ||||| |    
T  39845234 tacctcaacaaacaatctcgggggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacatcactttta 39845135  T
Q  275 cctcctccac 284  Q
    ||||||||||    
T  39845134 cctcctccac 39845125  T

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Target: scaffold0044 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 288
Target Start/End: Complemental strand, 43259 - 43165
Alignment:
Q  194 gggagcaccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttcacctcctccactaac 288  Q
    |||||| ||||||||| |||||| ||||||||||||| | ||||||||||||||| | |||| || |||||| ||| || ||||| |||||||||    
T  43259 gggagctccaacaccattcataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaac 43165  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 7114967 - 7115056
Alignment:
Q  199 caccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttcacctcctccactaac 288  Q
    |||||||||||||| ||  |||| || ||||||| ||||||||||||||| | ||||||||| |||| ||| || |||||||||||||||    
T  7114967 caccaacaccactcgtagaacatgcaagccgggatattaaatctccctaataaccacctccacgacataaccttgacctcctccactaac 7115056  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 38092890 - 38092982
Alignment:
Q  196 gagcaccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttcacctcctccactaac 288  Q
    |||| ||||||||| |||||| ||||||||||||  | ||||||||||||||| | |||| |||| || | ||| || |||||||||||||||    
T  38092890 gagctccaacaccattcataaaacatacatgccgaaatattaaatctccctaataaccacttccatgatataaccttaacctcctccactaac 38092982  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 288
Target Start/End: Complemental strand, 27220574 - 27220463
Alignment:
Q  177 cctcaacaaacactcacgggagcaccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttcacc 276  Q
    ||||| |||||| || ||||  ||||||  |||||||||||||| |||||| || | ||||||||| ||||| | ||| ||||||||||  || ||||||    
T  27220574 cctcatcaaacagtcccggggacaccaagtccactcataatacaaacatgctggaatattaaatcttcctaaaagccatctccaagacaccaccttcacc 27220475  T
Q  277 tcctccactaac 288  Q
    ||||||||||||    
T  27220474 tcctccactaac 27220463  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 1547958 - 1547849
Alignment:
Q  175 tacctcaacaaacactcacgggagcaccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttca 274  Q
    |||||||||||||| ||  ||| |||||||| ||| |||||| ||||||| ||||| ||||| ||||| ||||| | | |||| |||||||  ||||| |    
T  1547958 tacctcaacaaacaatcttgggggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaaccttcaagacatcactttta 1547859  T
Q  275 cctcctccac 284  Q
    ||||||||||    
T  1547858 cctcctccac 1547849  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 42773709 - 42773758
Alignment:
Q  239 atctccctaacacccacctccaagacaaaactttcacctcctccactaac 288  Q
    |||||||||||| ||||||||||||||| ||||| |||||||||||||||    
T  42773709 atctccctaacaaccacctccaagacaacactttaacctcctccactaac 42773758  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 38785103 - 38785020
Alignment:
Q  201 ccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttcacctcctccac 284  Q
    ||||||||||||||| ||||| ||  | || |  |||||||| ||||||| || ||||||||||||||| ||||||||||||||    
T  38785103 ccaacaccactcatagtacatgcaaactggaatgttaaatcttcctaacaaccgcctccaagacaaaacattcacctcctccac 38785020  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 38696368 - 38696430
Alignment:
Q  207 ccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaac 269  Q
    |||||||||| ||| ||| || ||||| ||||| ||||| |||| ||||||||||||||||||    
T  38696368 ccactcataaaacaaacaagctgggaccttaaacctccccaacaaccacctccaagacaaaac 38696430  T

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