View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8583_low_7 (Length: 341)
Name: NF8583_low_7
Description: NF8583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8583_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 42091308 - 42091641
Alignment:
| Q |
1 |
caccaacttgtcagattcagcattaccttccaacaacagatttcccagtaagttattttgagttagcttaacgcattagtagtacnnnnnnna------- |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42091308 |
caccaacttgtcagattcagcattaccttccaacaacagatttcccagtaagttattttgagttagcttaacgcattagtagtactttttatttgttttt |
42091407 |
T |
|
| Q |
94 |
gtttcaagtgtgctttcaaagttactactatatctttcttcttttggatccaacactttaactaattcttacannnnnnnnctctttattaggaatagga |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42091408 |
gtttcaagtgtgctttcaaagttactactatatctttcctcttttggatccaacactttaactaattcttacattttct--ctctttattaggaatagga |
42091505 |
T |
|
| Q |
194 |
atgggaagccatttcagcttatctcaatggcaagaacttgagttacaagctttgatatttaggtacatgttggttggtgcttctgttcctcctgaacttc |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42091506 |
atgggaagccatttcagcttatctcaatggcaagaacttgagttacaagctttgatatttaggtacatgttggttggtgcttctgttcctcctgaacttc |
42091605 |
T |
|
| Q |
294 |
ttcaacctatcaagaaaagtcttcttcattcatctc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42091606 |
ttcaacctatcaagaaaagtcttcttcattcatctc |
42091641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University