View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8584_high_3 (Length: 544)

Name: NF8584_high_3
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8584_high_3
NF8584_high_3
[»] chr5 (6 HSPs)
chr5 (4-478)||(39952528-39953004)
chr5 (33-154)||(23920117-23920238)
chr5 (473-526)||(39953032-39953085)
chr5 (131-226)||(22917308-22917404)
chr5 (131-229)||(13596832-13596931)
chr5 (136-202)||(1685106-1685172)
[»] chr3 (4 HSPs)
chr3 (226-478)||(50416739-50416993)
chr3 (473-522)||(50416662-50416711)
chr3 (136-216)||(42614280-42614360)
chr3 (168-229)||(41053754-41053816)
[»] scaffold0001 (1 HSPs)
scaffold0001 (33-211)||(12729-12907)
[»] chr8 (5 HSPs)
chr8 (31-201)||(24847957-24848127)
chr8 (33-154)||(30344377-30344498)
chr8 (117-229)||(28940743-28940856)
chr8 (138-229)||(2680265-2680357)
chr8 (174-229)||(30344500-30344557)
[»] chr6 (11 HSPs)
chr6 (33-154)||(18985279-18985400)
chr6 (105-201)||(8746751-8746847)
chr6 (136-229)||(2627674-2627763)
chr6 (170-229)||(11681699-11681760)
chr6 (137-229)||(22978347-22978435)
chr6 (137-229)||(23809968-23810056)
chr6 (134-216)||(34218741-34218820)
chr6 (131-202)||(22721094-22721165)
chr6 (150-229)||(1363155-1363235)
chr6 (136-216)||(11168835-11168915)
chr6 (33-85)||(11682650-11682702)
[»] chr7 (8 HSPs)
chr7 (33-171)||(25350576-25350714)
chr7 (33-171)||(25356270-25356408)
chr7 (151-216)||(33097879-33097944)
chr7 (131-226)||(25731043-25731139)
chr7 (151-211)||(31299417-31299477)
chr7 (168-229)||(33105296-33105358)
chr7 (150-202)||(4478967-4479019)
chr7 (150-227)||(21895080-21895159)
[»] chr2 (4 HSPs)
chr2 (119-228)||(25123459-25123571)
chr2 (138-229)||(45003691-45003783)
chr2 (150-216)||(15084343-15084409)
chr2 (139-191)||(44800576-44800628)
[»] chr4 (4 HSPs)
chr4 (138-229)||(5482954-5483046)
chr4 (138-229)||(1694811-1694903)
chr4 (137-216)||(36678774-36678851)
chr4 (152-216)||(1967467-1967531)
[»] chr1 (3 HSPs)
chr1 (131-229)||(29693301-29693400)
chr1 (136-229)||(52037420-52037514)
chr1 (136-216)||(13624230-13624309)


Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 4 - 478
Target Start/End: Original strand, 39952528 - 39953004
Alignment:
Q  4 taatttcgctaatcacttcatttttgg-agcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatg 102  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952528 taatttcgctaatcacttcatttttggcagcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatg 39952627  T
Q  103 ttttagaccatgcatcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 202  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39952628 ctttagaccatgcatcacaaatattcggattatgcgaccttcgttctcaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccgttagag 39952727  T
Q  203 caaatttttaaaaagtacgtaattcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39952728 caaatttttaaaaagtacgtaattcaaatgagaataaatcatcgattgtataaactttgttgtgatggttaacatcagaaaccatagcttgcaacatatt 39952827  T
Q  303 tgggaaagactaaaagtttggatatatctgataatgtgacatggatgtgtctattattttagtgatatattgatgagaaagctagcatctaacttaacta 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39952828 tgggaaagactaaaagtttggatatatctgataatgtgacatggatgtgtctattattttagtgatatattgatgtgaaagctagcatctaacttaacta 39952927  T
Q  403 -nnnnnnnnnncattcgcagagttattctttttcatttctggtgatccttattctttcgttggtgatggccattgtt 478  Q
               ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  39952928 tttttttttttcattcgcagagttattctttttcatttgtggtgatccttattcattcgttggtgatggccattgtt 39953004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 23920117 - 23920238
Alignment:
Q  33 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 132  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23920117 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 23920216  T
Q  133 tatgcgaccttcgttcccaaat 154  Q
    |||| ||||||||||| |||||    
T  23920217 tatgtgaccttcgttcacaaat 23920238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 473 - 526
Target Start/End: Original strand, 39953032 - 39953085
Alignment:
Q  473 attgttaattctgctttaactacaatgattgtgggtgttcttaaaggagtcggt 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39953032 attgttaattctgctttaactacaatgattgtgggtgttcttaaaggagtcggt 39953085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 22917308 - 22917404
Alignment:
Q  131 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaatt 226  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||   ||||||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  22917308 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctatcctttagagcaaattttttaaaaattacgtaatt 22917404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 13596832 - 13596931
Alignment:
Q  131 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 229  Q
    ||||||| |||||||||| |||||||| |||  ||||||||||    |||||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  13596832 attatgcaaccttcgttctcaaatttacgaagcatggcaatgtcgcataatttgaacatctctcctttagagcaatttttttaaaaaatacgtaattcaa 13596931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 1685172 - 1685106
Alignment:
Q  136 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 202  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||| ||||||    
T  1685172 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagag 1685106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 226 - 478
Target Start/End: Complemental strand, 50416993 - 50416739
Alignment:
Q  226 tcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggat 325  Q
    |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||    
T  50416993 tcaaatgagaataaattatagattgtataaactttgttgtgatggttaacatcagaaaccattgctttcaacatatctgggaaagactaaaagtttgcat 50416894  T
Q  326 atatctgataatgtgacatggatgtgtc---tattattttagtgatatattgatgagaaagctagcatctaacttaactannnnnnnnnncattcgcaga 422  Q
    ||||||||||| ||||||||| ||||||   ||||||||||||| |||||||||| ||||||||||||||||||||||||          | ||||||||    
T  50416893 atatctgataacgtgacatggctgtgtcatttattattttagtgttatattgatgtgaaagctagcatctaacttaactatttttttttcc-ttcgcaga 50416795  T
Q  423 gttattctttttcatttctggtgatccttattctttcgttggtgatggccattgtt 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  50416794 gttattctttttcatttctggtgatccttattctttcgttggtgatgggcattgtt 50416739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 473 - 522
Target Start/End: Complemental strand, 50416711 - 50416662
Alignment:
Q  473 attgttaattctgctttaactacaatgattgtgggtgttcttaaaggagt 522  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50416711 attgttaattctgctttaactacaacgattgtgggtgttcttaaaggagt 50416662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 42614360 - 42614280
Alignment:
Q  136 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 216  Q
    ||||||||||||| |||||||  ||| |||  |||||||  ||||||||||||||||| | ||| || |||||||||||||    
T  42614360 gcgaccttcgttctcaaattttcgaagaataacaatgtttcgtaatttgaacatctcttctttaaagtaaatttttaaaaa 42614280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 41053754 - 41053816
Alignment:
Q  168 caatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 229  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||| || |||||||||    
T  41053754 caatgttccgtaatttgaacatctcacatttagagcaaattttttaaaaaatatgtaattcaa 41053816  T

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Target: scaffold0001 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 12729 - 12907
Alignment:
Q  33 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 132  Q
    |||||| |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||  ||||| ||||||||||||||||||||||    
T  12729 catctacatttctgctgcagtacattatgtatgtaatgacaatgattgttatgttatcttttatgccatgccttagatcatgcatcacaaatattcggat 12828  T
Q  133 tatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 211  Q
    ||||||||||||||||  ||||||| ||| ||||||||| ||   | |||||||||||||||| |||||| || |||||    
T  12829 tatgcgaccttcgttcttaaatttacgaagaatggcaatatttcctcatttgaacatctctcctttagagtaatttttt 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 24848127 - 24847957
Alignment:
Q  31 agcatctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcgg 130  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||  |||||||| ||||||| |||  |||  ||||||||||||||  ||||||||||    
T  24848127 agcatctatatttgtgctgcagtacgttatgtatgtaatgacaatggttgttatgttatctttgatgttatgccttagaccatgcatcgtaaatattcgg 24848028  T
Q  131 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattaga 201  Q
    |||||||||||||||||| |||||||| ||| |||| ||||||| | |||||||||||||||||| |||||    
T  24848027 attatgcgaccttcgttctcaaatttacgaagaatgacaatgttttataatttgaacatctctcctttaga 24847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 30344377 - 30344498
Alignment:
Q  33 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 132  Q
    ||||||||||| || || ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30344377 catctatatttctgttgtagtacattatgtacgcaatgacaataattgttatgctatcttttatgccatgtcttagaccatgcatcacaaatattcggat 30344476  T
Q  133 tatgcgaccttcgttcccaaat 154  Q
    |||| ||||||| ||| |||||    
T  30344477 tatgtgaccttcattcacaaat 30344498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 28940856 - 28940743
Alignment:
Q  117 tcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaa 215  Q
    |||||||||||| ||||||| |||||| |||| ||| |||| ||| |||| |||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  28940856 tcacaaatattcagattatgggacctttgttctcaagtttacgaagaatgacaatgttctgtaatttgaacatctctcctttagaacaaattttttaaaa 28940757  T
Q  216 agtacgtaattcaa 229  Q
    ||||||||||||||    
T  28940756 agtacgtaattcaa 28940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 2680357 - 2680265
Alignment:
Q  138 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttta-aaaagtacgtaattcaa 229  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||    
T  2680357 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 2680265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 30344500 - 30344557
Alignment:
Q  174 tctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattcaa 229  Q
    |||||||||||||||||||||| ||||||| ||  ||||| |||| ||||||||||||    
T  30344500 tctgtaatttgaacatctctcctttagagctaatttttttgaaaaatacgtaattcaa 30344557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 18985400 - 18985279
Alignment:
Q  33 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 132  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18985400 catctatatttctgctggagtacattatgtacgcaatgacaataattgttatgctatctttaatgccatgtcttagaccatgcatcacaaatattcggat 18985301  T
Q  133 tatgcgaccttcgttcccaaat 154  Q
    |||| ||||||||||| |||||    
T  18985300 tatgtgaccttcgttcacaaat 18985279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 8746847 - 8746751
Alignment:
Q  105 ttagaccatgcatcacaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattaga 201  Q
    ||||||||| ||||  |||||||| |||||||||||||| |||| |||||||| ||| |||| ||||||||  ||||||||||||| |||| |||||    
T  8746847 ttagaccatacatcgtaaatattcagattatgcgacctttgttctcaaatttacgaagaatgacaatgttccataatttgaacatccctcctttaga 8746751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 2627763 - 2627674
Alignment:
Q  136 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 229  Q
    ||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  2627763 gcgaccttcgttctcaaatttacgaagaatagcaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 2627674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 11681760 - 11681699
Alignment:
Q  170 atgttctgtaatttgaacatctctccattagagcaaattttt--aaaaagtacgtaattcaa 229  Q
    |||||||||||||||||||||||||| |||||| || |||||  ||||||||||||||||||    
T  11681760 atgttctgtaatttgaacatctctcctttagagtaatttttttaaaaaagtacgtaattcaa 11681699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 22978435 - 22978347
Alignment:
Q  137 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 229  Q
    |||||||||||| |||||||| ||| ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  22978435 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 22978347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 23809968 - 23810056
Alignment:
Q  137 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 229  Q
    |||||||||||| |||||||| ||| ||   ||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  23809968 cgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 23810056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 34218741 - 34218820
Alignment:
Q  134 atgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 216  Q
    ||||||||||||||  | |||||||||| |||  |||| ||| ||||||||||||||||||| |   ||||||||||||||||    
T  34218741 atgcgaccttcgttttcgaatttatgaagaattacaatattccgtaatttgaacatctctcctt---agcaaatttttaaaaa 34218820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 202
Target Start/End: Original strand, 22721094 - 22721165
Alignment:
Q  131 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 202  Q
    ||||||| |||| ||||| |||||| | ||| |||||||||||   ||||||||||||||||||| ||||||    
T  22721094 attatgcaacctacgttctcaaattaacgaagaatggcaatgtcgcgtaatttgaacatctctcctttagag 22721165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 1363155 - 1363235
Alignment:
Q  150 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag-caaatttttaaaaagtacgtaattcaa 229  Q
    |||||||| ||| |||  |||||||| ||||||||||||| ||||| ||||||  ||| ||||||||| || |||||||||    
T  1363155 caaatttacgaagaataacaatgttccgtaatttgaacatatctcctttagagtaaaaattttaaaaaatatgtaattcaa 1363235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 11168835 - 11168915
Alignment:
Q  136 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 216  Q
    ||||||||||||| |||| ||| ||| |||   ||||||| |||||||||||||| |||  |||||| || ||||||||||    
T  11168835 gcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagagaaattttttaaaaa 11168915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 11682702 - 11682650
Alignment:
Q  33 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatg 85  Q
    ||||||||| | || |||||||||||||||||| |||||||||| || |||||    
T  11682702 catctatatgtgtgttgcagtacattatgtatgaaatgacaatagttattatg 11682650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 25350714 - 25350576
Alignment:
Q  33 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 132  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25350714 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25350615  T
Q  133 tatgcgaccttcgttcccaaatttatgaaaaatggcaat 171  Q
    |||||| ||||||||| |||||||| ||| |||| ||||    
T  25350614 tatgcgtccttcgttctcaaatttacgaagaatgacaat 25350576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 25356408 - 25356270
Alignment:
Q  33 catctatatttatgctgcagtacattatgtatgtaatgacaataattgttatgctatcttttatgccatgttttagaccatgcatcacaaatattcggat 132  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  25356408 catctatatttatgctgtagtacattatctatgtaataacaatgattgttatgttattttttatgtcatgccttagaccatgcatcacaaatattcggat 25356309  T
Q  133 tatgcgaccttcgttcccaaatttatgaaaaatggcaat 171  Q
    |||||| ||||||||| |||||||| ||| |||| ||||    
T  25356308 tatgcgtccttcgttctcaaatttacgaagaatgacaat 25356270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 33097944 - 33097879
Alignment:
Q  151 aaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 216  Q
    ||||||| ||| |||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  33097944 aaatttacgaagaatgacaatgttccgtaatttgaacatctctcctttagagcaaattttttaaaa 33097879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 25731043 - 25731139
Alignment:
Q  131 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaatt 226  Q
    ||||||| |||||||||| |||||||| ||| | || ||||||   ||||||||||||||||||| |||||||||  |||||||||| |||||||||    
T  25731043 attatgcaaccttcgttctcaaatttacgaagactgacaatgtcgcgtaatttgaacatctctcctttagagcaatttttttaaaaaatacgtaatt 25731139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 31299417 - 31299477
Alignment:
Q  151 aaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 211  Q
    ||||||||||| |||| |||||||| ||||||| ||||||||||| ||||| |||||||||    
T  31299417 aaatttatgaagaatgacaatgttccgtaattttaacatctctcctttagaacaaattttt 31299477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 33105296 - 33105358
Alignment:
Q  168 caatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 229  Q
    |||||||| ||||||||||||||||||  || |||||||||||| ||||| ||||||||||||    
T  33105296 caatgttccgtaatttgaacatctctcttttggagcaaatttttaaaaaaatacgtaattcaa 33105358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 4479019 - 4478967
Alignment:
Q  150 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagag 202  Q
    |||||||| ||| | | |||||||||||||||||||| |||||||| ||||||    
T  4479019 caaatttacgaagattagcaatgttctgtaatttgaatatctctcctttagag 4478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 21895080 - 21895159
Alignment:
Q  150 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattc 227  Q
    |||||||| ||| ||| | ||||||| ||||||||||||| ||||| |||||| |||  |||||||||| || |||||||    
T  21895080 caaatttacgaagaatagtaatgttccgtaatttgaacatatctcctttagagtaaaattttttaaaaaatatgtaattc 21895159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 25123571 - 25123459
Alignment:
Q  119 acaaatattcggattatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt---aaaa 215  Q
    |||||| |||||||||||| |||||||||| ||| |||| ||| |||| |||||||| ||||||||||||||||||  || ||||||||||||   ||||    
T  25123571 acaaatgttcggattatgcaaccttcgttctcaagtttacgaagaatgacaatgttccgtaatttgaacatctctcatttggagcaaatttttttaaaaa 25123472  T
Q  216 agtacgtaattca 228  Q
    | |||||||||||    
T  25123471 aatacgtaattca 25123459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 45003783 - 45003691
Alignment:
Q  138 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttt-taaaaagtacgtaattcaa 229  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||  ||||| ||||||||||||    
T  45003783 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaattttaaaaaaaatacgtaattcaa 45003691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 15084409 - 15084343
Alignment:
Q  150 caaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 216  Q
    |||||||| ||| ||| ||||||||| ||||||||||||| ||||| |||||| ||| |||||||||    
T  15084409 caaatttacgaagaatagcaatgttccgtaatttgaacatatctcctttagagtaaaattttaaaaa 15084343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 44800576 - 44800628
Alignment:
Q  139 accttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatct 191  Q
    |||||||||| |||||||| ||| ||| ||||||||  |||||||||||||||    
T  44800576 accttcgttctcaaatttacgaagaatagcaatgtttcgtaatttgaacatct 44800628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 5482954 - 5483046
Alignment:
Q  138 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 229  Q
    ||||||||||| |||||||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||    
T  5482954 gaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 5483046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 1694811 - 1694903
Alignment:
Q  138 gaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaag-tacgtaattcaa 229  Q
    ||||||||||| |||||||| ||| ||| ||||||||| || |||||||||| ||||| ||||||||| ||||| ||||| | ||||||||||    
T  1694811 gaccttcgttctcaaatttacgaagaatagcaatgttccgtgatttgaacatatctcctttagagcaatttttttaaaagatgcgtaattcaa 1694903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 36678851 - 36678774
Alignment:
Q  137 cgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 216  Q
    |||||||||||| |||||||| ||||||| |||||||| |||||||| |||||||||   |||||| |||||||||||||    
T  36678851 cgaccttcgttctcaaatttacgaaaaatagcaatgttttgtaatttaaacatctct--tttagagtaaatttttaaaaa 36678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 1967531 - 1967467
Alignment:
Q  152 aatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 216  Q
    |||||| ||| |||| |||||||| ||||||||||||| ||||  ||| ||||||||||||||||    
T  1967531 aatttacgaagaatgacaatgttccgtaatttgaacatttctcttttaaagcaaatttttaaaaa 1967467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 29693301 - 29693400
Alignment:
Q  131 attatgcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 229  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||   ||||||||||||||||| | ||||| |||| |||||||||| ||||||||||||    
T  29693301 attatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctcttctttagaacaaattttttaaaaaatacgtaattcaa 29693400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 52037514 - 52037420
Alignment:
Q  136 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 229  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||| ||||||||||||||||||| |||||| ||  |||||||||| ||| ||||||||    
T  52037514 gcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagaggaatttttttaaaaaatacataattcaa 52037420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 13624230 - 13624309
Alignment:
Q  136 gcgaccttcgttcccaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 216  Q
    ||||||||||||| |||| ||| ||| ||| | ||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  13624230 gcgaccttcgttctcaaaattacgaagaataggaatgttccgtaatttgaacatctctcctttagag-aaatttttaaaaa 13624309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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