View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8584_high_4 (Length: 498)
Name: NF8584_high_4
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8584_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 30221835 - 30222211
Alignment:
| Q |
19 |
cagagacattggaactttctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagat |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30221835 |
cagaaacattggaactttctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagat |
30221934 |
T |
|
| Q |
119 |
ggaacaatgttcaacttaaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgggct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30221935 |
ggaacaatgttcaacttaaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgggct |
30222034 |
T |
|
| Q |
219 |
gtctctggatcactttgaatttttggatcatatacctttgtttgctagggaatcctatgttaggaacaaaattggtttacctgaatttaggttttcttcc |
318 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30222035 |
gtctctggatcactttgattttttggatcatatacctttgtttgctagggaatcctatgttaggaacaaaattggtttacctgaatttaggttttcttcc |
30222134 |
T |
|
| Q |
319 |
tgagggagttttttggtttggtcccctccctcttctttgtatccttttctcttttaatctatcctttgtgggttgct |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30222135 |
tgagggagttttttggtttggtcccctccctcttctttgtttccttttctcttttactctatcctttgtgggttgct |
30222211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 395
Target Start/End: Original strand, 1567285 - 1567352
Alignment:
| Q |
328 |
tttttggtttggtcccctccctcttctttgtatccttttctcttttaatctatcctttgtgggttgct |
395 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||| |
|
|
| T |
1567285 |
tttttgatttggtcccctccctcttctttgtatcttttactctttttatatatcctttgtgggttgct |
1567352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 17628054 - 17627678
Alignment:
| Q |
19 |
cagagacattggaactttctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagat |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17628054 |
cagaaacattggaactttctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagat |
17627955 |
T |
|
| Q |
119 |
ggaacaatgttcaacttaaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgggct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17627954 |
ggaacaatgttcaacttaaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgggct |
17627855 |
T |
|
| Q |
219 |
gtctctggatcactttgaatttttggatcatatacctttgtttgctagggaatcctatgttaggaacaaaattggtttacctgaatttaggttttcttcc |
318 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17627854 |
gtctctggatcactttgattttttggatcatatacctttgtttgttagggaatcctatgttaggaacaaaattggtttacctgaatttaggttttcttcc |
17627755 |
T |
|
| Q |
319 |
tgagggagttttttggtttggtcccctccctcttctttgtatccttttctcttttaatctatcctttgtgggttgct |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17627754 |
tgagggagttttttggtttggtcccctccctcttctttgtttccttttctcttttaatctatcctttgtgggttgct |
17627678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 26206577 - 26206644
Alignment:
| Q |
148 |
atgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg |
215 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||| || ||||| |||||||| ||||||||||| |
|
|
| T |
26206577 |
atgaattgtatagttactcacatatataaggaaggaaatcaggtagcagattcccttgcaaactttgg |
26206644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 32022233 - 32022609
Alignment:
| Q |
19 |
cagagacattggaactttctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagat |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32022233 |
cagaaacattggaactttctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagat |
32022332 |
T |
|
| Q |
119 |
ggaacaatgttcaacttaaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgggct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32022333 |
ggaacaatgttcaacttaaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgggct |
32022432 |
T |
|
| Q |
219 |
gtctctggatcactttgaatttttggatcatatacctttgtttgctagggaatcctatgttaggaacaaaattggtttacctgaatttaggttttcttcc |
318 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32022433 |
gtctctggatcactttgattttttggatcatatacctttgtttgctagggaatcctacgttaggaacaaaattggtttacctgaatttaggttttcttcc |
32022532 |
T |
|
| Q |
319 |
tgagggagttttttggtttggtcccctccctcttctttgtatccttttctcttttaatctatcctttgtgggttgct |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32022533 |
tgagggagttttttggtttggtcccctccctcttctttgtttccttttctcttttaatctatcctttgtgggttgct |
32022609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 4083459 - 4083528
Alignment:
| Q |
146 |
atatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg |
215 |
Q |
| |
|
|||| ||||||||||||||||| || || |||||||| |||||||| ||| ||||||| ||||||||||| |
|
|
| T |
4083459 |
atatcaattgtatagttactcatatctttagggaaggtaaccaagttgcttattcccttgcaaactttgg |
4083528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 28 - 312
Target Start/End: Original strand, 12747109 - 12747392
Alignment:
| Q |
28 |
tggaactttctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagatggaacaatg |
127 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| || || |||||||| | ||||| ||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
12747109 |
tggaactttctttggttggagacagattccatgttggttgtccaggcttttaaaagttccattctggttccttggcaagtcagaaacagatggaataatg |
12747208 |
T |
|
| Q |
128 |
ttcaacttaaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgggctgtctctgga |
227 |
Q |
| |
|
|||||| | | ||| |||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| | |
|
|
| T |
12747209 |
ttcaacgtta-ttagctaatatgcattgtatagtcactcacattttcaaggaaggaaaccaagtagctgattcccttgcaaactttgggctatctctgaa |
12747307 |
T |
|
| Q |
228 |
tcactttgaatttttggatcatatacctttgtttgctagggaatcctatgttaggaacaaaattggtttacctgaatttaggttt |
312 |
Q |
| |
|
||||| || || ||| | ||||||||||||||| |||||||||||||||||| ||||||||||| ||| |||| | ||||||| |
|
|
| T |
12747308 |
tcactacgagttcttgaaaaatatacctttgtttgttagggaatcctatgttagaaacaaaattggcttatctgattataggttt |
12747392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 280 - 395
Target Start/End: Complemental strand, 43683036 - 43682921
Alignment:
| Q |
280 |
aggaacaaaattggtttacctgaatttaggttttcttcctgagggagttttttggtttggtcccctccctcttctttgtatccttttctcttttaatcta |
379 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43683036 |
aggaacaaatttggtttacctgaatttaggttttcttcctgagggagttttttggtttggtcccctccctcttctttgtttccttttctcttttaatcta |
43682937 |
T |
|
| Q |
380 |
tcctttgtgggttgct |
395 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43682936 |
tcctttgtgggttgct |
43682921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 14699316 - 14699386
Alignment:
| Q |
145 |
aatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg |
215 |
Q |
| |
|
||||||||||||||||||||| | || | |||||||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
14699316 |
aatatgaattgtatagttacttatatctatagggaagggaatcaagtagcagattcccttgcaaactttgg |
14699386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 44882887 - 44882954
Alignment:
| Q |
147 |
tatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg |
215 |
Q |
| |
|
||||||||||||||||| ||| ||||| || |||||||||||||| | | ||||||| ||||||||||| |
|
|
| T |
44882887 |
tatgaattgtatagttattcatatttttagagaaggaaaccaagt-ggttattcccttgcaaactttgg |
44882954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 44882987 - 44883039
Alignment:
| Q |
248 |
atatacctttgtttgctagggaatcctatgttaggaacaaaattggtttacct |
300 |
Q |
| |
|
|||||||||||||||||| |||||| | ||| | |||||| |||||||||||| |
|
|
| T |
44882987 |
atatacctttgtttgctatggaatcttttgtgaagaacaagattggtttacct |
44883039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 46 - 349
Target Start/End: Original strand, 11526839 - 11527141
Alignment:
| Q |
46 |
gagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagatggaacaatgttcaacttaaattaacta |
145 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| ||||| |||| || ||||||||| | || || | ||||||||||||||| ||| ||||| |
|
|
| T |
11526839 |
gagacagattctatgttagtggttcacacttttagaaattcatctcttgttccttggcaatttaggaatcgttggaacaatgttcaagttaccctaactt |
11526938 |
T |
|
| Q |
146 |
atatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgggctgt-ctctggatcactttgaatttttgg |
244 |
Q |
| |
|
| | || |||||||| ||||| ||||| || |||| ||| || |||| ||||||||| ||||||||||| || | || || |||| | |||||||| | |
|
|
| T |
11526939 |
gtttaaactgtatagtaactcatatttttagagaagcaaatcatgtaggtgattcccttgcaaactttggtctttactttgaatcattatgaattttgga |
11527038 |
T |
|
| Q |
245 |
atcatatacctttgtttgctagggaatcctatgttaggaacaaaattggtttacctgaatttaggttttcttcctgagggagttttttggtttggtcccc |
344 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||| | |||||||| ||||| | |||||| |||||||||||||||| |
|
|
| T |
11527039 |
gtaatatacctttgtttgctaggaaatcctatgttagaaacaaaattggtttgcctaattttaggttctcttcatcagggag--ttttggtttggtcccc |
11527136 |
T |
|
| Q |
345 |
tccct |
349 |
Q |
| |
|
||||| |
|
|
| T |
11527137 |
tccct |
11527141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 20930655 - 20930750
Alignment:
| Q |
36 |
tctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagatggaacaatgttca |
131 |
Q |
| |
|
|||||||||||||||| |||||||||| || | || |||||||| ||||| | || || || |||||| | ||||| ||||||||||||||||| |
|
|
| T |
20930655 |
tctttggttagagacaaattctatgttagttttgcaggcttttaaaaattcaaaccttgttccatggcaaattagaaatagatggaacaatgttca |
20930750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 42877707 - 42877776
Alignment:
| Q |
146 |
atatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg |
215 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
42877707 |
atatgaattgtatagtcactcatatttttagggaaggaaatcaagttgctgattccctcgcaagctttgg |
42877776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 27051772 - 27051835
Alignment:
| Q |
152 |
attgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg |
215 |
Q |
| |
|
||||||||||||||||||| || || ||||| |||||||| | ||||||||| ||||||||||| |
|
|
| T |
27051772 |
attgtatagttactcacatatttagagaagggaaccaagttgttgattcccttgcaaactttgg |
27051835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 41341430 - 41341609
Alignment:
| Q |
36 |
tctttggttagagacagattctatgttggtggttcaagcttttaagaattccactctagtgccttggcaagtcagaaacagatggaacaatgttcaactt |
135 |
Q |
| |
|
|||||||||||||||| |||||||||| || | || |||||||| ||||| | || || || |||||| | ||||| |||||| |||||||||| || |
|
|
| T |
41341430 |
tctttggttagagacaaattctatgttagttttgcaggcttttaaaaattcaaaccttgttccatggcaaattagaaatagatgggacaatgttcatatt |
41341529 |
T |
|
| Q |
136 |
aaattaactaatatgaattgtatagttactcacattttcagggaaggaaaccaagtagctgattccctcgcaaactttgg |
215 |
Q |
| |
|
| ||| ||| |||||||||| ||||| || || || |||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
41341530 |
cttctttctataatgcattgtatagtcactcatatatttagagaaggaaaccaagtggttgattcccttgcaaactttgg |
41341609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 351
Target Start/End: Original strand, 41341641 - 41341745
Alignment:
| Q |
248 |
atatacctttgtttgctagggaatcctatgttaggaacaaaattggtttacctgaatttaggtttt---cttcctgagggagttttttggtttggtcccc |
344 |
Q |
| |
|
||||||||||||||||||| |||| | ||||| |||||| |||||||||||| | | || ||||| |||| |||||||| ||||| |||||||||| |
|
|
| T |
41341641 |
atatacctttgtttgctagagaatattttgttaagaacaagattggtttacctaattataagttttctgcttcttgagggag--ttttgctttggtcccc |
41341738 |
T |
|
| Q |
345 |
tccctct |
351 |
Q |
| |
|
||||||| |
|
|
| T |
41341739 |
tccctct |
41341745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 16521069 - 16521019
Alignment:
| Q |
426 |
atatttgttttatgtgatgttttgtcacttttgcaaataaaagaagttaatg |
477 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||| |||||||||||||||| |
|
|
| T |
16521069 |
atatttattttatgtgat-ttttgtcacttctgcagataaaagaagttaatg |
16521019 |
T |
|
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