View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8584_low_1 (Length: 721)
Name: NF8584_low_1
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8584_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 619; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 47 - 701
Target Start/End: Original strand, 23332595 - 23333249
Alignment:
| Q |
47 |
atatgtggacgaatgagcgatagaagcgcatgaccgatccaccctcacgttggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat |
146 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332595 |
atatatggacgaatgagcgatagaagcgcatgaccgatccaccctcacgtgggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat |
23332694 |
T |
|
| Q |
147 |
ttcgactcctgatctctctgcgatagtcatatctagaagattcggctgtacataagtcagggtgacccacgcaccacgatctaccttatagaaacccttc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332695 |
ttcgactcctgatctctctgcgatagtcatatctagaagattcggctgtacatacgtcagggtgacccacgcaccacgatctaccttatagaaacccttc |
23332794 |
T |
|
| Q |
247 |
agctcagcccaaccatcccgcagatagaccttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacataatcat |
346 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332795 |
agctcagcccaaccatcccgcagataaaccttgccatttttcacgtggaccttgaccttgaacatgtttctgtttggatcacgcaacatgacataatcat |
23332894 |
T |
|
| Q |
347 |
caacatgcacaccatattccttggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgacacggttagttccaatcaacatac |
446 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332895 |
caacatgcaaaccatattccttggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgacacggttagttccaatcaacatac |
23332994 |
T |
|
| Q |
447 |
caaaacagtgcaatgcccactaatgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaacttgacaaccaagaaatatcagcgta |
546 |
Q |
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| T |
23332995 |
caaaacagtgcaatgcccacaaatgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaacttgacaaccaagaaatatcagcgta |
23333094 |
T |
|
| Q |
547 |
agtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcgtagcattacattccaaaagtagccaaattaaaaccatcgcctaatattcaa |
646 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333095 |
agtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcatagcattactttccaaaagtagccaaattaaaaccatcgcctaatattcaa |
23333194 |
T |
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| Q |
647 |
aacaacatgtggccagcaaaatagagaagaacaaacatctattttccacgcaaac |
701 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333195 |
aacaacatgtggccagcaaaatagagaagaacaaacatctattttccacgcaaac |
23333249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 368
Target Start/End: Complemental strand, 10955166 - 10955074
Alignment:
| Q |
274 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacataatcatcaacatgcacaccatattcctt |
368 |
Q |
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|||||||| || ||| ||||||||| |||||||||||||| |||| |||||||||| |||||||| |||||||| |||| |||||||||||| |
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| T |
10955166 |
accttgcccttcttcttgtggaccttaacctcgaacatgttcttgttaggatcacgca--atgacatagtcatcaacgtgcaaaccatattcctt |
10955074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 23322331 - 23322373
Alignment:
| Q |
10 |
gacatcaccaaacacaatcgttgtaaaatccaaacgcatatgt |
52 |
Q |
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| T |
23322331 |
gacatcaccaaacacaaacgttgtaaactccaaacgcatatgt |
23322373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 23332498 - 23332540
Alignment:
| Q |
10 |
gacatcaccaaacacaatcgttgtaaaatccaaacgcatatgt |
52 |
Q |
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| T |
23332498 |
gacatcaccaaacacaaacgttgtaaactccaaacgcatatgt |
23332540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 2027692 - 2027759
Alignment:
| Q |
274 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacata |
341 |
Q |
| |
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||||||||||||||| ||| || || ||||| |||||||| |||||||||||||||| |||||||| |
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| T |
2027692 |
accttgccatttttcttgtgaactttaacctcaaacatgttcttgtttggatcacgcaaaatgacata |
2027759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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