View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8584_low_11 (Length: 343)
Name: NF8584_low_11
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8584_low_11 |
 | |
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| [»] chr4 (1 HSPs) |
| |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 26 - 343
Target Start/End: Complemental strand, 3882780 - 3882463
Alignment:
| Q |
26 |
acatcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaag |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3882780 |
acatcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaag |
3882681 |
T |
|
| Q |
126 |
agtaacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacatggaggatgttgtgtcctactaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
3882680 |
agtaacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctattggcggtagcagacgcatggaggatgttgtgtcctactaa |
3882581 |
T |
|
| Q |
226 |
atatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgtt |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3882580 |
atatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgagccgtt |
3882481 |
T |
|
| Q |
326 |
ctaatacccaagccccca |
343 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
3882480 |
ctaatacccaagccccca |
3882463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 343
Target Start/End: Complemental strand, 50452960 - 50452643
Alignment:
| Q |
26 |
acatcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaag |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50452960 |
acatcatgaatatcaataacagggactaaagaaccaaggggcccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaag |
50452861 |
T |
|
| Q |
126 |
agtaacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacatggaggatgttgtgtcctactaa |
225 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| || ||| |||||| ||||||||| |||||| |||||| | |
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|
| T |
50452860 |
agtaaccaagtttgaagatatctttggcacggatgatagatgaccaagaaggtgagctattggtggtggcagacgcatggaggacgttgtgccctactga |
50452761 |
T |
|
| Q |
226 |
atatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgtt |
325 |
Q |
| |
|
|||||| |||||||||| || |||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||| |
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|
| T |
50452760 |
atattttgcagagagaagattcacccatagtttatttgatgactgtaccatatcccaaactaactttccaagaagacaagtgttagcgtttcgagccgtt |
50452661 |
T |
|
| Q |
326 |
ctaatacccaagccccca |
343 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
50452660 |
ctaatacccaacccccca |
50452643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 10103006 - 10103076
Alignment:
| Q |
266 |
gactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttctaatacccaa |
336 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||||||| |
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|
| T |
10103006 |
gactgcaccatatcccaaactaactttccaagaagacaagtgttagagtttcgggccgttctaatacccaa |
10103076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 339
Target Start/End: Complemental strand, 43299198 - 43299085
Alignment:
| Q |
226 |
atatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgtt |
325 |
Q |
| |
|
|||||||| |||||||| | |||||| | |||||||| ||||||||||| |||||||||||||||||||| || ||||| ||| | || || || ||| |
|
|
| T |
43299198 |
atatttagtagagagaaggttcacccataatttatttgtagactgaaccatgtcccaaactaactttccaaggaggcaagtattaacatttcgggctgtt |
43299099 |
T |
|
| Q |
326 |
ctaatacccaagcc |
339 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
43299098 |
ctaatacccaagcc |
43299085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 32891276 - 32891164
Alignment:
| Q |
227 |
tatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttc |
326 |
Q |
| |
|
||||||| |||||||| || |||||| | |||||| |||||| ||||| ||||||| |||||| ||||| |||||||| ||||| || | || ||||| |
|
|
| T |
32891276 |
tatttagtagagagaagattcacccataacttattttttgactggaccatgtcccaaattaacttcccaagaagacaagtattagcattccttgtcgttc |
32891177 |
T |
|
| Q |
327 |
taatacccaagcc |
339 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
32891176 |
tgatacccaagcc |
32891164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 5192439 - 5192518
Alignment:
| Q |
227 |
tatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagt |
306 |
Q |
| |
|
||||||| |||||||| | |||||| | |||||||| ||||||||||| |||||||||||||||| ||| |||||||| |
|
|
| T |
5192439 |
tatttagtagagagaaggttcacccataatttatttgtggactgaaccatgtcccaaactaactttcaaaggagacaagt |
5192518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 10102799 - 10102921
Alignment:
| Q |
59 |
ccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagtaacctagtttgaatatatctttggcacgga |
158 |
Q |
| |
|
|||||| |||||||| |||||||||| | |||||||| ||||| ||||||| |||| | |||| | ||||| |||||| |||||||||||||| | |
|
|
| T |
10102799 |
ccaaggaggccatggggacaccaattgttgaaccaaaaggaggattaacccgagcctgcgcgccaataataaccatttttgaaaatatctttggcacgaa |
10102898 |
T |
|
| Q |
159 |
tgattgatgaccaagaaggtgag |
181 |
Q |
| |
|
|||| |||| |||||| |||||| |
|
|
| T |
10102899 |
tgatagatgcccaagagggtgag |
10102921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 336
Target Start/End: Original strand, 23206957 - 23207264
Alignment:
| Q |
29 |
tcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagt |
128 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| | |||||| || |||||| || |||||||||||||| ||||| || || ||||||||||| | |
|
|
| T |
23206957 |
tcatgaatatcaataatggggaccaaagaaccaaggagaccatggggatgccaattgctgaaccaaaaagaggaggaaccggagcccggcctccaagaat |
23207056 |
T |
|
| Q |
129 |
aacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtgagctatcggcggtagcagacacatggaggatgttgtgtcctactaaata |
228 |
Q |
| |
|
|||| |||||| || ||||| ||||| ||||| | || ||| |||||||| || | | ||| | | | | || |||| ||| | ||| | ||| |
|
|
| T |
23207057 |
aaccatttttgaaaatgtcttttgcacgaatgatagctgcccaggaaggtgaactgttgccggaaaccttcgcttgaaggacgttaggccctgttgtata |
23207156 |
T |
|
| Q |
229 |
tttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttcta |
328 |
Q |
| |
|
||||||||| |||| || |||||| | || |||| || || |||||||||||||||||||||||||| |||||| | ||||| || || || |||||| |
|
|
| T |
23207157 |
tttagcagaaagaagattcacccataacttgtttgtagattggaccatatcccaaactaactttccaagaagacaaatattagcatttcgagctgttcta |
23207256 |
T |
|
| Q |
329 |
atacccaa |
336 |
Q |
| |
|
|||||||| |
|
|
| T |
23207257 |
atacccaa |
23207264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 180
Target Start/End: Original strand, 24892927 - 24893078
Alignment:
| Q |
29 |
tcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagt |
128 |
Q |
| |
|
|||||||||||||||| ||||| | || |||||| | |||||| |||||||||| ||||||||||| ||||| ||||| || || ||||||||||| | |
|
|
| T |
24892927 |
tcatgaatatcaataatggggaccgaggaaccaaggagaccatggggacaccaattgctaaaccaaaacgaggaggaaccggagcccggcctccaagaat |
24893026 |
T |
|
| Q |
129 |
aacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtga |
180 |
Q |
| |
|
||||| |||||| || ||||| ||||| ||||| | || ||| |||||||| |
|
|
| T |
24893027 |
aaccttgtttgagaatgtcttttgcacgaatgatagctgtccatgaaggtga |
24893078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 24989754 - 24989904
Alignment:
| Q |
30 |
catgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagta |
129 |
Q |
| |
|
|||||||||||||||| || | ||||| |||||| | |||||||| |||||||| || |||||||| ||||| |||||||| ||||||| ||||| || |
|
|
| T |
24989754 |
catgaatatcaataaccggaatcaaagacccaaggagtccatggtggcaccaattgctgaaccaaaaggaggatgaacccgagcctggccgccaagcata |
24989853 |
T |
|
| Q |
130 |
acctagtttgaatatatctttggcacggatgattgatgaccaagaaggtga |
180 |
Q |
| |
|
||| ||||| ||||| || ||||| ||||| | || |||||||||||| |
|
|
| T |
24989854 |
accatttttgagaatatccttagcacgaatgatagctgcccaagaaggtga |
24989904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 24893170 - 24893230
Alignment:
| Q |
272 |
accatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttctaatac |
332 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||||||| || || |||||||||| |
|
|
| T |
24893170 |
accatatcccaaactaactttccaagaaggcaagtattagcgtttcgagctgttctaatac |
24893230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 339
Target Start/End: Original strand, 32724744 - 32724865
Alignment:
| Q |
218 |
cctactaaatatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgc |
317 |
Q |
| |
|
|||||| ||||||||| | |||||| | |||||| | |||||||| |||| ||||| |||||||||||||||||||| ||||| || || | || | |
|
|
| T |
32724744 |
cctactgaatatttagtatagagaaggttcacccataatttatttggggactagaccatgtcccaaactaactttccaagaagacatgtattttcatttc |
32724843 |
T |
|
| Q |
318 |
gtgccgttctaatacccaagcc |
339 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
32724844 |
gggctgttctaatacccaagcc |
32724865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 38646468 - 38646580
Alignment:
| Q |
227 |
tatttagcagagagaatatccacccaaagtttatttgatgactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttc |
326 |
Q |
| |
|
||||||| |||||||| || |||||| | |||||| |||||| ||||| ||||||| |||||| ||||| |||||||| ||||| || | |||||||| |
|
|
| T |
38646468 |
tatttagtagagagaagattcacccataacttattttttgactggaccatgtcccaaattaacttcccaagaagacaagtattagcattccttgccgttc |
38646567 |
T |
|
| Q |
327 |
taatacccaagcc |
339 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
38646568 |
tgatacccaagcc |
38646580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 23425560 - 23425409
Alignment:
| Q |
29 |
tcatgaatatcaataacagggactaaagagccaagggggccatggtgacaccaattactaaaccaaaaagaggaagaacccgaacctggcctccaagagt |
128 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||| | |||||| |||||||||| || |||||||| ||||| ||||| || || ||||||||||| | |
|
|
| T |
23425560 |
tcatgaatatcaataatggggaccgaagaaccaaggagaccatggggacaccaattgcttaaccaaaacgaggaggaaccggagcccggcctccaagaat |
23425461 |
T |
|
| Q |
129 |
aacctagtttgaatatatctttggcacggatgattgatgaccaagaaggtga |
180 |
Q |
| |
|
| || |||||| || ||||| ||||| ||||| | || ||| |||||||| |
|
|
| T |
23425460 |
agccatttttgaaaatgtcttttgcacgaatgatagctgcccatgaaggtga |
23425409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 23425317 - 23425253
Alignment:
| Q |
272 |
accatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttctaatacccaa |
336 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| | ||||| || || || |||||||||||||| |
|
|
| T |
23425317 |
accatatcccaaactaactttccaagaagtcaattattagcttttcgagctgttctaatacccaa |
23425253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 575239 - 575166
Alignment:
| Q |
266 |
gactgaaccatatcccaaactaactttccaagcagacaagtgttagcgttgcgtgccgttctaatacccaagcc |
339 |
Q |
| |
|
||||| |||| ||||||||||||||| || || ||||| || || || || || |||||||||||||||||||| |
|
|
| T |
575239 |
gactggaccaaatcccaaactaacttaccgaggagacatgtatttgcatttcgagccgttctaatacccaagcc |
575166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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