View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8584_low_12 (Length: 319)
Name: NF8584_low_12
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8584_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 29 - 305
Target Start/End: Complemental strand, 1684414 - 1684146
Alignment:
| Q |
29 |
aacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgt |
128 |
Q |
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| T |
1684414 |
aacttcctcaatggactttgctggacaacatatgctctgctccatccctttgacctttatgttctggtaatt---------tatattcctatagtattgt |
1684324 |
T |
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| Q |
129 |
tgtgacttgtgagttaataattggatgaatgatttatacttaacccatgtta-ttaatatacatttttactgattattgcagatcagcaatggtattgga |
227 |
Q |
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| T |
1684323 |
tgtgacttgtgagttaataattggatgaatgatttatacttaacccatattaattaatatacactttcactgactactgcagatcagcaatggtattgga |
1684224 |
T |
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| Q |
228 |
gtaatctctggaactgttcagctcatactatatggctattactggtgcaggggagataatcagattggtgatgataag |
305 |
Q |
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| T |
1684223 |
gtaatctctggaactgttcagctcatactatatggctattactggtgcaggggagataatcagattgatgatgataag |
1684146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 1694860 - 1694564
Alignment:
| Q |
18 |
tctctcttaccaacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcc |
117 |
Q |
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| T |
1694860 |
tctctcttaccaacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaatt---------tatattcc |
1694770 |
T |
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| Q |
118 |
tatagtattgttgtgacttgtgagttaataattggatg---------------aatgatttatacttaacccatgttattaatatacatttttactgatt |
202 |
Q |
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| T |
1694769 |
tatagtattgttgtgatttgtgagttaataattgtatgtaattcaattggattaaagatttatacttaacccatgttattaatatacatttttactgatt |
1694670 |
T |
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| Q |
203 |
attgcagatcagcaatggtattggagtaatctctggaactgttcagctcatactatatggctattactggtgcaggggagataatcagattggtgatgat |
302 |
Q |
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| T |
1694669 |
attgcagatcagtaatggtattggagtaatctctggaactattcagctcatactatatggctattactggtgcaggggagataatcagattggtgatgat |
1694570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 1699952 - 1699864
Alignment:
| Q |
18 |
tctctcttaccaacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaattcattta |
106 |
Q |
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| T |
1699952 |
tctctctaaccaacttcctcaatggtttgtgctggacaacatatgctctcatccacccattggatatttatgtcttggtaattaattta |
1699864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 1970616 - 1970554
Alignment:
| Q |
240 |
actgttcagctcatactatatggctattactggtgcaggggagataatcagattggtgatgat |
302 |
Q |
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| T |
1970616 |
actgttcagctcatattatatgcttattactcgtgcaagggagaaaatcagattgatgatgat |
1970554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 300
Target Start/End: Complemental strand, 1674064 - 1673944
Alignment:
| Q |
180 |
attaatatacatttttactgattattgcagatcagcaatggtattggagtaatctctggaactgttcagctcatactatatggctattactggtgcaggg |
279 |
Q |
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| T |
1674064 |
attaatatacattggtattgaatattttaggtcagcaatggtattggagcaatctcaggttttgttcagctcatattatatgtttatttttggtgcaagg |
1673965 |
T |
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| Q |
280 |
gagataatcagattggtgatg |
300 |
Q |
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|||| ||| ||| || ||||| |
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| T |
1673964 |
gagaaaataagaatgatgatg |
1673944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 1699335 - 1699287
Alignment:
| Q |
213 |
agcaatggtattggagtaatctctggaactgttcagctcatactatatg |
261 |
Q |
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||||||||||||||||| | ||||||| |||||||||||||||||||| |
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| T |
1699335 |
agcaatggtattggagtggtttctggaattgttcagctcatactatatg |
1699287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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