View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8584_low_14 (Length: 303)
Name: NF8584_low_14
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8584_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 24567116 - 24566867
Alignment:
| Q |
20 |
ctctacacgttcaatattttataaattattattattattgagcaataacatagacattccataaaatactagatttcttccatgttctataatcattgat |
119 |
Q |
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| T |
24567116 |
ctctacacgttcaatattttataaattattattattattgagcaataacatagacattccataaaatactagatttctcccatgttctatcatcattgat |
24567017 |
T |
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| Q |
120 |
ttagttccgataaaggaagatgcatttagtcaagaatgctgagtgcaagtcactatggatagatgatggttaaaaatatctttttaacaagatttttcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24567016 |
ttagttccgataaaggaagatgcatttagtcaagaatgctaagtgcaagtcactatggatagatgatggttaaaaatatctttttaacaagatttttcaa |
24566917 |
T |
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| Q |
220 |
tctgtccattcaatatgtactcttataaattgaaccttggcaataacctt |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
24566916 |
tctgtccattcaatatgtactcttataaattgaaccttcgcaacaacctt |
24566867 |
T |
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