View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8584_low_2 (Length: 625)
Name: NF8584_low_2
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8584_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 83 - 607
Target Start/End: Complemental strand, 12126250 - 12125718
Alignment:
| Q |
83 |
gacaatgattgctctagcgatgacaatggcgatgatgcatagtgatagtttgagttttataaaattttagtttcatcagattagtacctacaattgtaaa |
182 |
Q |
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| T |
12126250 |
gacaacgatcgctctagcgatgacaatggcgatgatgcatagtgatagtttgagttttataaaattttagtttcatcagattagtacctacaattgtaaa |
12126151 |
T |
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| Q |
183 |
acatcggttattttcattgaactgtaaaattttggtatatttttatctatttgcaaattttggagattaaaatgatcggaatttataatcttaaaatcgt |
282 |
Q |
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| T |
12126150 |
acatcggttattttctttcaattgtaaaattttggtatatttttgtctatttgcaaattttggagattaaaatgatcggaatttataatcttaaaatcgt |
12126051 |
T |
|
| Q |
283 |
cacagtttataatttcaatgatttgtttcaactgtttatacatgactacagacata--------ggaatattgcattcttacagacataggaatgagaag |
374 |
Q |
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| T |
12126050 |
cacagtttataatttcaatgatttgtttcaactgtttatacatgactacacatgttaagtttttggcatattgcattcttacagacataggaatgagaag |
12125951 |
T |
|
| Q |
375 |
tttattcccaacgttttgtgttttcacgtttaagcatatgcatatttatttatcttgtagtgaatgtttgttcgtgcaaatatatgtattgatttacaga |
474 |
Q |
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| T |
12125950 |
tttattctcaaccttttgtgttttcacgtttgagcatatgcatatttatttatcttgtagtgaatgtttgttcgtgcaaatatatgtattgatttacaga |
12125851 |
T |
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| Q |
475 |
atttttctttaattttcagtaaggatttgtttgtaagccaaaacagattgaatccgaagcttgtcaagagtttccctatagaaaacacatttttattaac |
574 |
Q |
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| T |
12125850 |
atttttctttaattatcagtaaggatttgtttgtaagccaaaacacatcgaatccgaagcttgtcaagagtttccctatagaaaacacatttttattaac |
12125751 |
T |
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| Q |
575 |
cctttcttataatacttgatctatgccaaaggg |
607 |
Q |
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| T |
12125750 |
cctttcttataatacttgatctatgccaaaggg |
12125718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 12124250 - 12124132
Alignment:
| Q |
79 |
caacgacaatgattgctctagcgatgacaatggcgatgatgcatagtgatagtttgagttttataaaattttagtttcatcagattagtacctacaattg |
178 |
Q |
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| T |
12124250 |
caacgacagtgatcgctccagcgatgacgatggcaatgatgcatagtgatagttggagttttatataattttagtttcaccaaattagtacctacaaaat |
12124151 |
T |
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| Q |
179 |
taaaacatcggttattttc |
197 |
Q |
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| T |
12124150 |
taaatcatcggttattttc |
12124132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 12123857 - 12123807
Alignment:
| Q |
282 |
tcacagtttataatttcaatgatttgtttcaactgtttatacatgactaca |
332 |
Q |
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| T |
12123857 |
tcacagtttataatttcaatgatttgtttcaactgtttatacatgactaca |
12123807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 2368625 - 2368686
Alignment:
| Q |
409 |
catatgcatatttatttatcttgtagtgaatgtttgttcgtgcaaatatatgtattgattta |
470 |
Q |
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| T |
2368625 |
catatgcatatttatttatcttctaatggatgtttgttcctgcaaatatatttactgattta |
2368686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 2368715 - 2368804
Alignment:
| Q |
476 |
tttttctttaattttcagtaaggatttgtttgtaagccaaaacagattgaatccgaagcttgtcaagagtttccctatagaaaacacatt |
565 |
Q |
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| T |
2368715 |
ttttcctttaattttctgtaatgttttgcgtgtaagctaaaacactttgaatcagaagcttgtcaagagtttccctgaagagaacacatt |
2368804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 2373969 - 2374018
Alignment:
| Q |
210 |
aattttggtatatttttatctatttgcaaattttggagattaaaatgatc |
259 |
Q |
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| T |
2373969 |
aatttgggtatatttttgtctacttgcaaattttggagattaaaatgatc |
2374018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 12124089 - 12124042
Alignment:
| Q |
217 |
gtatatttttatctatttgcaaattttggagattaaaatgatcggaat |
264 |
Q |
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| T |
12124089 |
gtatatttttgtttatttgcaaattttggagattaaaatgattggaat |
12124042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 2546159 - 2546098
Alignment:
| Q |
409 |
catatgcatatttatttatcttgtagtgaatgtttgttcgtgcaaatatatgtattgattta |
470 |
Q |
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| T |
2546159 |
cataggcatatttaattttcttctaatgatggtttgttcttgcaaatatatgtattgattta |
2546098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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