View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8584_low_3 (Length: 593)
Name: NF8584_low_3
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8584_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 275 - 575
Target Start/End: Complemental strand, 38618815 - 38618519
Alignment:
| Q |
275 |
accctctcatgttgaagccactcactcacttacaacaaaagatgtggcctatgagttctgnnnnnnncacttccaacatttcaactaccatgaagatgaa |
374 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38618815 |
accctctcatgttgaagccactcact----tacaacaaaagatgtggcctatgagttctgaaaaaaacacttccaacatttcaactaccatgaagatgaa |
38618720 |
T |
|
| Q |
375 |
agaagaatctaccacagttgaaacaaaatctgtggcagctacaagttcaacatgttgttgtttggtgacaaagttgatgagaaaactcaagagatcacgt |
474 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38618719 |
agaagaatctaccacagttgatacaaaatctgtggcagctacaagttcaacatgttgttgtttggtgacaaagttgatgagaaaactcaagagatcacgt |
38618620 |
T |
|
| Q |
475 |
agccgaatcagacaaggttcgtttcaatgtcactatgacccattgagctattctttgaattttgacacaagtgattgtggaagcttattggatgaggatt |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38618619 |
agccgaatcagacaaggttcgtttcaatgtcactatgacccattgagctattctttgaattttgacacaagtgattgtggaagcttattggatgaggatt |
38618520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 38619053 - 38618854
Alignment:
| Q |
18 |
catcattaatatctttatcaaatcaaatgttaccatttttactattacaaaatcaaatatcacttgatttcatctatacatatttaaatctaagctactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38619053 |
catcattaatatctttatcaaatcaaatgttaccatttttactattacaaaatcaaatatcacttgatttcatctatacatatttaaatctaagctactt |
38618954 |
T |
|
| Q |
118 |
atagtgctcacgtggctgatgtagatttcagtcaagccagcttacataatatattctcaatagtaacttttatttgagatctatcaagaaatttgcatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38618953 |
atagtgctcacgtggctgatgtagatttcagtcaagccagcttacataatatattctcaatagtaacttttatttgagatctatcaagaaatttgcatta |
38618854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University