View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8584_low_4 (Length: 567)
Name: NF8584_low_4
Description: NF8584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8584_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 521
Target Start/End: Complemental strand, 3810099 - 3809590
Alignment:
| Q |
17 |
attatactgaataagttgttgttggactaccaattgataaattattctatatttggcttaatggtttcaattgatcaatgaaatgaacaattttcttctt |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
3810099 |
attatactgaataagctgttgttggactaccaattgataaattattctatatttggcttaatggattcaattgattaatgaaatgaactattttcttctt |
3810000 |
T |
|
| Q |
117 |
ctcatgtacgtgttgttacccataattcatttctagcaatagtgttaccgcaatttagaaatggaacaatatattaaagatgttagagtgcagattatga |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3809999 |
ctcatttacgtgttgttacccataattcatttctagcaatagtgttaccgcaatttagaaatagaacgatatattaaagatgttagagtgcagattatga |
3809900 |
T |
|
| Q |
217 |
cactaaacaagctgttacagtgcttccaatttcctccaaacttaattgcttagttttttgcattctttgtggatgatgtcattaaatagttcacgataag |
316 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
3809899 |
cactaaataagctgttacactgcttccaatttcctccaaacttaattgctcagttttttgcattctttgtggatgatatcattaaatagttcaggataag |
3809800 |
T |
|
| Q |
317 |
tgaatccctacacaacaaacaaacacacttaagcctctataataaaatatgtaaacacatcaattat-----nnnnnnncatatgtaaacttaaacttag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3809799 |
tgaatccctacacaacaaacaaacacacgtaagcctctataataaaatatgtaaacacatcaattataaaaaaaatatatatatgtaaacttaaacttag |
3809700 |
T |
|
| Q |
412 |
cttgaagacataccatataatctgaacccttttgtgatgggagccgtattctatcttgagcttcaatagcagcatatagacatgatcttcttctacatga |
511 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3809699 |
cttgaagacataccatgtaatctgaacccttttgtgatgggagccgtattctatcttgagcttcaatagcagcatatagacatgatcttcttctacatga |
3809600 |
T |
|
| Q |
512 |
taatcccata |
521 |
Q |
| |
|
||||| |||| |
|
|
| T |
3809599 |
taatcgcata |
3809590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 3810244 - 3810095
Alignment:
| Q |
63 |
ctatatttggcttaatggtttcaattgatcaatgaaatgaacaattttcttcttctcatgtacgtgttgttacccataattcatttctagcaatagtgtt |
162 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| ||| |||||||||| | | ||||||||||||||||||||| |||| || ||||||| | |
|
|
| T |
3810244 |
ctatatttggcttaatggtgtcaattgataaatgaaataaactattttcttctctt--tttacgtgttgttacccataattgatttttaacaatagttgt |
3810147 |
T |
|
| Q |
163 |
accgcaatttagaaatggaacaatatattaaagatgttagagtgcagattat |
214 |
Q |
| |
|
||||||| |||||||||||||||||| | |||| ||||| |||||| ||||| |
|
|
| T |
3810146 |
accgcaacttagaaatggaacaatatctaaaagttgttacagtgcaaattat |
3810095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University